PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67802.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 691aa MW: 79646.9 Da PI: 8.4156

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67802.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.8	5.5e-16	85	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+++A +GF r+ +++k+ +k ++ C+++gk ++ ++ +++r+ ++ +C+ak+ vk++ +++we t +++eHnH+l+p MLOC_67802.2 85 RFYSTHALLTGFAARRGTNYKR------KKFHLLCNRSGKLKPAQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHPLCP 166 5******************9......4678*******9988..88888889999******9.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-13	85	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-28	289	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.741	571	607	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence Send to blast
MLHKQTNSAD PAVQSAEGQD QLLGVTEGHD LSSNDTSSGS DSGSSSGSEL DTELGKCFYP 60 SIEALENSRP PEVGMKFPTL EDAERFYSTH ALLTGFAARR GTNYKRKKFH LLCNRSGKLK 120 PAQDLQRKRK VNVLGSQCQA KVIVKLHNEQ WEFTGVKHEH NHPLCPSPSL TSFFLDHKYL 180 SSEEKLFLRV LQQSRVNPRK AMNIFQRMRS NFGNVSSSKE KDTSNSQCVD QWRKENSDVE 240 TALKRFKELE LRNLGFSYTM QKDEDNIVRS LFWTDARSKL DYEIFGDFIS FSTTYSTNRH 300 NMPFTPIIGM NNHGRILVFG CALLQDQKAE TFKWMFQTFL HVMGGKLPKT IIIDQDEGMV 360 KAIAEVMPQV RPRLCKFSVM RKAQEMLGAF MAARGNMNAE LHGLVDNSLT EKEFEEGWAV 420 LIERYDASEN EYLRLMWKIR KRWVPIYFQA DFYPFVESAG HVERTNLLFK DNVLLQDSVE 480 KFIEQYERIQ ESIVKTEEED TLQPATEPAY FSMQPIERHA ARIYTRQIFL RVQKELYCST 540 ALNAYEIRGG SAYRLEKVFN YKNPEFDRNS FEVLAEPGTH VFKCQCAKFT RDGFLCCHIF 600 RVFTQLGVTE IPAQYIVPRW AREFREERLK EHEKKCSKRA ENKMRCAMLL GKMAGIGKGI 660 CMDGAKCGGF MLELDKVQER LATTTEVNPR K

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence Send to blast

MLHKQTNSAD PAVQSAEGQD QLLGVTEGHD LSSNDTSSGS DSGSSSGSEL DTELGKCFYP  60
SIEALENSRP PEVGMKFPTL EDAERFYSTH ALLTGFAARR GTNYKRKKFH LLCNRSGKLK  120
PAQDLQRKRK VNVLGSQCQA KVIVKLHNEQ WEFTGVKHEH NHPLCPSPSL TSFFLDHKYL  180
SSEEKLFLRV LQQSRVNPRK AMNIFQRMRS NFGNVSSSKE KDTSNSQCVD QWRKENSDVE  240
TALKRFKELE LRNLGFSYTM QKDEDNIVRS LFWTDARSKL DYEIFGDFIS FSTTYSTNRH  300
NMPFTPIIGM NNHGRILVFG CALLQDQKAE TFKWMFQTFL HVMGGKLPKT IIIDQDEGMV  360
KAIAEVMPQV RPRLCKFSVM RKAQEMLGAF MAARGNMNAE LHGLVDNSLT EKEFEEGWAV  420
LIERYDASEN EYLRLMWKIR KRWVPIYFQA DFYPFVESAG HVERTNLLFK DNVLLQDSVE  480
KFIEQYERIQ ESIVKTEEED TLQPATEPAY FSMQPIERHA ARIYTRQIFL RVQKELYCST  540
ALNAYEIRGG SAYRLEKVFN YKNPEFDRNS FEVLAEPGTH VFKCQCAKFT RDGFLCCHIF  600
RVFTQLGVTE IPAQYIVPRW AREFREERLK EHEKKCSKRA ENKMRCAMLL GKMAGIGKGI  660
CMDGAKCGGF MLELDKVQER LATTTEVNPR K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67802.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178460.1	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	A0A287GCJ3	0.0	A0A287GCJ3_HORVV; Uncharacterized protein
STRING	MLOC_67802.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-77	FAR1-related sequence 5