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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MLOC_67608.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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| Family | LSD | ||||||||
| Protein Properties | Length: 1124aa MW: 125377 Da PI: 7.5683 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 37.2 | 5e-12 | 1093 | 1117 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL Y r+A+ VRC++CdtV
MLOC_67608.3 1093 CGGCQTLLIYIRNATTVRCSCCDTV 1117
************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF52540 | 2.7E-48 | 171 | 447 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.7E-13 | 177 | 321 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 4.9E-47 | 178 | 472 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 6.0E-10 | 197 | 212 | No hit | No description |
| PRINTS | PR00364 | 6.0E-10 | 271 | 285 | No hit | No description |
| PRINTS | PR00364 | 6.0E-10 | 380 | 394 | No hit | No description |
| SuperFamily | SSF52058 | 4.08E-15 | 539 | 600 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 4.08E-15 | 636 | 945 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.7E-9 | 638 | 870 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| TIGRFAMs | TIGR01053 | 0.0012 | 1051 | 1078 | IPR005735 | Zinc finger, LSD1-type |
| TIGRFAMs | TIGR01053 | 2.6E-10 | 1090 | 1119 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 4.8E-9 | 1093 | 1117 | IPR005735 | Zinc finger, LSD1-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1124 aa Download sequence Send to blast |
MEVPIGISAS QGAMRSLPMK LESLLSGLGN RLQAEEKKKL RMLQGDLQGL IDNYLLEPSE 60 VESPASTASS WMEGVRELSY DIDDFIYELT HVARGGARIN VVLKRSRFKI SRFPGNVRRR 120 QWITDEISTF RTRVQEAIRR HTDYLGSNCK WRPSSSGQPP PPSLRSGEAA THLVGVDSSI 180 KQLRGWLEND GQPQHKVASI VGPGGYGKTT LAKQVYRMLG GQFDCLAFVR TSPKADMKGL 240 LTSILSQVGR HRLPADHACN VHHLVLNINA HLQDKTYLIV IQDLWALSTW DLINRSLPKG 300 NRCSRILTTT QVEVIAQACC ADNSKSIPTT KKEDDSRYII RKTTLTEYES RELFLSTAFG 360 KQAECPQHLK EVSNEIITAS GGLPLAIIIL ASILARQPAN SIEQWHYIRN SLGPALITSS 420 SLERINQVLN LGYGSLPHCL KACMLYLCLY EEGCVIWKDD LVKQWIAEGF TGAVEGHEAE 480 EVARSYFGEL VNRGMIQPVD INCNDEILSC TVHYMVLHFV RDKSMEENFC IAVDHSQTTI 540 KLADKVRRLA LHFGNVEDAT PPGPECMRLS KLRSMVFSGF PKCMPSIVDF RFLQVLTLKL 600 LVEPDKMSDN LTASDDLCVN ITEPDDLSDN RSECDGDLRY NLTEISELFR LRYFHLDACN 660 MSVLLPVQIR QLKYLVAWEI YAEVTAVPSD IVDLPGLLYL SIPSEAHLPT GIDRMTSLRT 720 LGLFNLNKNS SETIMGLSKL TNLQELRLTC DTLQPGNLEK NLDCLGVIVR KLRNLKRVTL 780 VPAASSLVNT QNDGGSSSMS ISWPGFSIQP LSPALLQTLE LSRHCCIFST LPEWTKELTN 840 LCILKIAVKR LSRKSIDILK GLPSLAALSL FLWTAYTAPA RIMFDDEGFS VLNYFKFVCA 900 TPCLEFLDGA MPNVRKLKLG FNANRLEQYS LGDTGFDRLT GLTEISTKIG GTGTANEHDI 960 RSAALSILTT VVAKHPSNPI INVQRVDWNF CGDEEMGMDE EHAIQKKNWE KDAQKEVYIR 1020 YRAKKEVDTR TYTPPESTLH PGNTVTGIQS QIMCSRCSTC LLYRKGAPAV LCAVCKAVSY 1080 PKGMETDHDH LICGGCQTLL IYIRNATTVR CSCCDTVNLA RPKP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 8e-40 | 31 | 529 | 22 | 504 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | MLOC_67608.3 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024318478.1 | 0.0 | uncharacterized protein LOC100833723 isoform X2 | ||||
| Refseq | XP_024318479.1 | 0.0 | uncharacterized protein LOC100833723 isoform X3 | ||||
| TrEMBL | A0A287Q6B2 | 0.0 | A0A287Q6B2_HORVV; Uncharacterized protein | ||||
| STRING | MLOC_67608.3 | 0.0 | (Hordeum vulgare) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP2751 | 19 | 33 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G32540.3 | 6e-23 | lsd one like 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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