PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67483.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 365aa    MW: 39200.3 Da    PI: 6.3193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67483.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14172218455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR++iN++f eL  ++P +     kK++K +iL+ A++Y+k+Lq
  MLOC_67483.1 172 DHIMAERKRREKINQRFIELSAVIPGL-----KKMDKGTILTDATRYVKELQ 218
                   699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-12172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-18172226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-17173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-15173222No hitNo description
SMARTSM003539.1E-16174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MLHELGQWRR TDLMGDMDDS LMFMQWAVST LQHQDEVGTD GGGERSACFP CLQALRDSSE  60
LVEAQNSTMT SSDDTGGGGG IISPATDAAV HQGSWSPASP TSGGPFAPSG VSSTGITNTL  120
SMSWNFGGVL PLPPPPVRSG GGGNLAAGAP LRSRVAQPTR GASTKGTPHA QDHIMAERKR  180
REKINQRFIE LSAVIPGLKK MDKGTILTDA TRYVKELQER VRSLEAAGGN HKSVETAVLV  240
RKPCRPVAPD DGEGSARFLL AAGTPEIRSQ LPEIEAKLSE DNVMVRIHCE MNGKGLFARV  300
LAEVEELHLR IVQNSVMPFT SSTVIITTMA KVEKGFTINT EEIVERLNYA LYQLSLSNSS  360
GNNNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
2177182RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659956e-54AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170214.10.0transcription factor NAI1-like
TrEMBLM0YB690.0M0YB69_HORVV; Uncharacterized protein
STRINGMLOC_67483.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-40bHLH family protein