PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67453.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 355aa    MW: 38238 Da    PI: 8.0973
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67453.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17e-32232287156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k+r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  MLOC_67453.1 232 KARRCWSPELHRQFVTALHQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 287
                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.514229289IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-29230290IPR009057Homeodomain-like
SuperFamilySSF466891.06E-16230290IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-25232287IPR006447Myb domain, plants
PfamPF002491.4E-7234285IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGLDVGEIGM GADLSLDLKM FAAKSLGRAR EAPAAAMDDC IRRLEEEKSK IEVFRRELPL  60
CARLLADVID VMKKEVEEKK RGGDRGENKE DAGAGDKSNW MSTAQLWTGD SVRGDDASEK  120
QDERRRSSEP ESHDGAVLPF KAVGSGAPAF APPSLRKDDK AVRMPDLPFL SPAPIKTSLA  180
AATGGAEESR RQLVGFAQEA ARAAAALAPA APSMSLQAQS QQTAQQQQQA RKARRCWSPE  240
LHRQFVTALH QLGGPQVATP KQIRELMKVD GLTNDEVKSH LQKYRLHNRR APGSPVANRP  300
IVLMGGLWIT QEQSSSQSGG SPPGPLHLSS SGVAASSVTV SGEEEDGRSE SYGWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-14232285154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-14232285154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-14232285154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-14232285154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509380.0AK250938.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100k19, mRNA sequence.
GenBankAK3606400.0AK360640.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173713.10.0myb family transcription factor EFM-like
TrEMBLF2D9S80.0F2D9S8_HORVV; Predicted protein
STRINGMLOC_67453.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-48G2-like family protein