PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67411.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

S1Fa-like

Protein Properties

Length: 80aa MW: 8891.65 Da PI: 10.4802

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67411.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	134.4	2.7e-42	11	80	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+ kGlnPG+ivllvv+++ll+f+vgny+ly yaqk+lPP+kkkPvskkklkreklkqGv++PGe MLOC_67411.3 11 NVIIEEVnKGLNPGMIVLLVVATFLLLFFVGNYALYLYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80 55667778*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	7.0E-8	12	80	No hit	No description
Pfam	PF04689	1.8E-39	16	80	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MAEQFAESAN NVIIEEVNKG LNPGMIVLLV VATFLLLFFV GNYALYLYAQ KTLPPKKKKP 60 VSKKKLKREK LKQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67411.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249022	1e-133	AK249022.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf15n14, mRNA sequence.
GenBank	AK251638	1e-133	AK251638.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126m03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159184.1	6e-49	DNA-binding protein S1FA2
Refseq	XP_020159185.1	6e-49	DNA-binding protein S1FA2
Swissprot	Q7XLX6	2e-33	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	M0YAY0	1e-48	M0YAY0_HORVV; Uncharacterized protein
STRING	MLOC_67411.1	1e-42	(Hordeum vulgare)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]