PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67050.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family E2F/DP
Protein Properties Length: 207aa    MW: 23542.6 Da    PI: 9.9603
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67050.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP53.63.6e-174622371
       E2F_TDP 23 givtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71
                  ++v+l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  MLOC_67050.6  4 ETVSLDEAARLLLGErhaesNMRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 62
                  799*****************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.9E-11162IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-9362IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.6E-14462IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.0E-14463IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEVETVSLDE AARLLLGERH AESNMRTKVR RLYDIANVLS SLNLIEKTQQ VDSRKPAFRW  60
LGQAKRKEGA AVTVALPPNR KIMSSKRAFG TDITNIDNKR GKLVLETENK PKLMQAGSSM  120
LKTFESQLGQ GKSSGFVYGP FHPAGARKQE VDDQTVRENE TKNIQDWESL AVSFRPQYQN  180
HALNDLFGHY VEAWRSWYLD LTRESTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67050.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753580.0AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187543.11e-147E2F transcription factor-like E2FE isoform X1
RefseqXP_020187544.11e-147E2F transcription factor-like E2FE isoform X2
TrEMBLM0Y9K81e-153M0Y9K8_HORVV; Uncharacterized protein
STRINGMLOC_67050.11e-151(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.25e-48DP-E2F-like 1