PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67050.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 183aa MW: 20890.7 Da PI: 10.4304 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 40.2 | 5.6e-13 | 1 | 38 | 39 | 71 |
E2F_TDP 39 vknkrRRiYDilNVLealnliek.....kekneirwkg 71 +++k+RR+YDi+NVL++lnliek ++k+++rw g MLOC_67050.5 1 MRTKVRRLYDIANVLSSLNLIEKtqqvdSRKPAFRWLG 38 689********************9999999******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02319 | 7.1E-11 | 1 | 38 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-7 | 2 | 38 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.4E-12 | 3 | 39 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MRTKVRRLYD IANVLSSLNL IEKTQQVDSR KPAFRWLGQA KRKEGAAVTV ALPPNRKIMS 60 SKRAFGTDIT NIDNKRGKLV LETENKPKLM QAGSSMLKTF ESQLGQGKSS GFVYGPFHPA 120 GARKQEVDDQ TVRENETKNI QDWESLAVSF RPQYQNHALN DLFGHYVEAW RSWYLDLTRE 180 STS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67050.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375358 | 0.0 | AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187543.1 | 1e-128 | E2F transcription factor-like E2FE isoform X1 | ||||
Refseq | XP_020187544.1 | 1e-128 | E2F transcription factor-like E2FE isoform X2 | ||||
TrEMBL | A0A287W6S8 | 1e-134 | A0A287W6S8_HORVV; Uncharacterized protein | ||||
TrEMBL | M0Y9K8 | 1e-134 | M0Y9K8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67050.1 | 1e-133 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 8e-40 | DP-E2F-like 1 |