PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6696.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 287aa    MW: 31923.8 Da    PI: 4.9649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6696.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-111462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l   +    g+ +W+++++  g+ R++k+c++rw +yl
      MLOC_6696.1 14 RGPWTAEEDRKLMGFILGNAGRcCWRAVPKLAGLLRCGKSCRLRWTNYL 62
                     89*************99998889**********99************97 PP
2Myb_DNA-binding48.42.1e-1571112447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T +E+ l vd+ ++lG++ W++Ia++++ gRt++++k++w+++
      MLOC_6696.1  71 LTDDEERLVVDLPAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 112
                      699****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-18563IPR009057Homeodomain-like
PROSITE profilePS512949.657962IPR017930Myb domain
SuperFamilySSF466896.27E-2311109IPR009057Homeodomain-like
SMARTSM007176.3E-51364IPR001005SANT/Myb domain
PfamPF002491.8E-91462IPR001005SANT/Myb domain
CDDcd001672.47E-51662No hitNo description
PROSITE profilePS5129426.20463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2364118IPR009057Homeodomain-like
SMARTSM007174.8E-1367115IPR001005SANT/Myb domain
PfamPF002495.4E-1371112IPR001005SANT/Myb domain
CDDcd001673.49E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRQPCCDKL GVKRGPWTAE EDRKLMGFIL GNAGRCCWRA VPKLAGLLRC GKSCRLRWTN  60
YLRPDLKRGL LTDDEERLVV DLPAKLGNRW SKIAAKLPGR TDNEIKNHWN THIKKKLIKM  120
GIDPVTHEPL EVRKQPLQAS LSTTSTQSST VTIECKSNNG QQCQQHDTYF NRDKDASLGD  180
GESGPPELSG TNTNNTTSGN SGIHDQDPLV KWLLEEEDDL PTIGIVEEPW LDFTVANDVD  240
KFNVIPSAMS WDIGATDWLL DYQDFGVGES SLLDDASIVD SSSESNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6696.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3660600.0AK366060.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2040B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184607.10.0protein ODORANT1-like
SwissprotQ50EX62e-85ODO1_PETHY; Protein ODORANT1
TrEMBLA0A287S0M90.0A0A287S0M9_HORVV; Uncharacterized protein
STRINGMLOC_6696.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.15e-79myb domain protein 20
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]