PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66865.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 257aa MW: 28031.6 Da PI: 8.2691 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.7 | 3.4e-10 | 125 | 182 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +R+ +i+eLe kv+ L++e ++L +l +l+ ++ l ++ MLOC_66865.2 125 KRVKRVLANRQSAARSKERRMRYIAELEHKVQILQTEATTLSAQLTHLQRDSSGLATH 182 999*********************************************9888776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-15 | 121 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.542 | 123 | 186 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.1E-11 | 125 | 179 | No hit | No description |
SuperFamily | SSF57959 | 4.5E-11 | 125 | 175 | No hit | No description |
Pfam | PF00170 | 1.7E-9 | 125 | 180 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 4.35E-22 | 126 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSMEGMDGLN SSDGDSRGSS MPPANGADSS ENESEDYGGV ESQVFLWGEA GKKRNADGEP 60 TAAAAARHAR SLSMDSLMGK LSFSANGGEP SKFSLEFGSG EFTPAEMKRI MADEKLAEMA 120 LADPKRVKRV LANRQSAARS KERRMRYIAE LEHKVQILQT EATTLSAQLT HLQRDSSGLA 180 THNNELKFRL QAMEQQAQLR DGEQPSNSRI LAHTNFRVCV VGRGARTGVV HLPVSPYHVL 240 HDATLIPLAR LPRIACR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66865.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366826 | 0.0 | AK366826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047D05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170859.1 | 1e-114 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 2e-40 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A287FH17 | 1e-148 | A0A287FH17_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66865.1 | 1e-143 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21230.2 | 3e-59 | bZIP family protein |
Publications ? help Back to Top | |||
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