PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66841.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 414aa    MW: 43353.3 Da    PI: 6.0534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66841.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10268315455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P++    +k   Ka +L + ++Y++sLq
  MLOC_66841.2 268 SHSLAERVRREKIGERMKLLQSLVPSC----NKITGKALMLDEIINYVQSLQ 315
                   8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-16262332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.57E-10262319No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16264335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7268315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTNEHFFPGE YFSSGLAAPF LGASYVQPPH SGFEAAAAMA FGLPWADQHL PVDSSATTAH  60
FDSALSSLVS SPASASAGGG LARGGEDDVA IGDLIGRLGS ICNGASANNS CYSTPLSSPP  120
RGAPQAFRGY GAIAALETGR LSRVSSSKSL VGNTSGVAAT APLDQNAQLE MSPETDSPAA  180
MQDPATKRGA AGSARKRKAA PAKGKAKASL PAVQPSCSMA AINTSPPKRP RVSDGGNDEN  240
AGAVEEEKSE PVKDYIHVRA RRGQATDSHS LAERVRREKI GERMKLLQSL VPSCNKITGK  300
ALMLDEIINY VQSLQRQVEF LSMKLSTMNP QLELDEQCIP SKEMAVPVYP SDDRNPGFSY  360
AGSPADSLTV APSQHHGAVL EGTFSWEQDC LQSMVQIGGT SGSHSQDPQA FYGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66841.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618140.0AK361814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1150A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162177.10.0transcription factor bHLH62-like isoform X2
TrEMBLF2DD470.0F2DD47_HORVV; Predicted protein
STRINGMLOC_66841.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-52bHLH family protein