PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_6679.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | BES1 | ||||||||
Protein Properties | Length: 357aa MW: 37853.8 Da PI: 7.8341 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 203.6 | 5.9e-63 | 15 | 162 | 2 | 147 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslqssl 98 g++r ptw+ErEnn+rRERrRRaiaakiy+GLRa+Gny+lpk++DnneVlkALc+eAGwvve+DGttyr+g+kp+ ++ +sasasp+ss+q MLOC_6679.1 15 GGTRVPTWRERENNRRRERRRRAIAAKIYTGLRAYGNYNLPKHCDNNEVLKALCNEAGWVVEPDGTTYRRGCKPPpQARPDPMRSASASPCSSYQ--- 109 789************************************************************************888888999***********... PP DUF822 99 kssalaspvesysaspksssfpspssldsislasa.........asllpvlsvlslvs 147 +sp++sy++sp+sssfps+ s+++i+l +sl+p+l++ls+ + MLOC_6679.1 110 -----PSPRASYNPSPASSSFPSSGSSSHITLGGGnnfiggvegSSLIPWLKNLSSNP 162 .....*************************9987678999999999999999998744 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 9.6E-68 | 15 | 159 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MMHGPAGGSG GHGLGGTRVP TWRERENNRR RERRRRAIAA KIYTGLRAYG NYNLPKHCDN 60 NEVLKALCNE AGWVVEPDGT TYRRGCKPPP QARPDPMRSA SASPCSSYQP SPRASYNPSP 120 ASSSFPSSGS SSHITLGGGN NFIGGVEGSS LIPWLKNLSS NPSFASSSKL PQLHHLYFNG 180 GSISAPVTPP SSSPTHTPRV KTDWENQCVL PPWAGANYTS LPNSTPPSPG HHVAPDPAWL 240 AGFQISSAGP SSPTYNLVSH NPFGIALASS SRACTPGQSG TCSPVMGDHP PVHHDVQMEM 300 VDGAADDFAF GSNSNDNNGS PPGLVKAWEG ERIHEECASD ELELTLGSSR TRGEPPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 4e-26 | 18 | 90 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 4e-26 | 18 | 90 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 4e-26 | 18 | 90 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 4e-26 | 18 | 90 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00248 | DAP | Transfer from AT1G78700 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_6679.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360181 | 0.0 | AK360181.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1112F17. | |||
GenBank | AK366794 | 0.0 | AK366794.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046O02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152195.1 | 0.0 | protein BZR1 homolog 3-like | ||||
Swissprot | Q5Z9E5 | 1e-175 | BZR3_ORYSJ; Protein BZR1 homolog 3 | ||||
TrEMBL | A0A287X918 | 0.0 | A0A287X918_HORVV; Uncharacterized protein | ||||
STRING | MLOC_6679.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 5e-64 | BES1/BZR1 homolog 4 |
Publications ? help Back to Top | |||
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