PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66753.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 846aa    MW: 87935 Da    PI: 10.3728
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66753.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07135178344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      +W+++Ed  l  +v++ G g+W  I r+ +   +Rt  q+  rw
     MLOC_66753.1 135 AWSKDEDAELMAGVHKCGEGNWLDILRKYNfdSTRTYGQLSQRW 178
                      7*******************************99**99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.104128186IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-10128186IPR009057Homeodomain-like
SMARTSM007172.7E-6132184IPR001005SANT/Myb domain
CDDcd116601.22E-15134183No hitNo description
PfamPF002494.6E-6135178IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-11135192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MLWRYIAYGH DFVENVEDGS PQPLGDESDL ECEIEPSPKP SNEATAEASR FAKILMYGPS  60
REQGSSHRAN SDIPLLNTPN EKIPRVTSDK QLAQSHRLTN GTGPVSNSKQ APHTGLSPDS  120
FDGNGPHKKT KKLKAWSKDE DAELMAGVHK CGEGNWLDIL RKYNFDSTRT YGQLSQRWAV  180
ICRRQATTKP AKAKPVTGGY DMKATQKAFF MALDMPMGKP GGLSTLRSGA SQQSTQHPAP  240
VFGAAAPELK SATSSSSFPL PVPVPSAAPG SVQAQVQIQS PRVQQAPVQA APSKVSNVSI  300
KSRNSSKKQT AQANPTNAPS SIQAAAIAAG GRIATASIAT NLLKAAQSPQ AVHIRSRGKG  360
SSKTSTSSKA STMAGEPGTQ TGSAQHPELP NCSAPTPSPT VLITQSTEQV NVVPEVAGVN  420
PPEQSASAHL LEPDRALSTT PEPGPCDNME IDDDSTFCVV TMEDLFPEDV KQPETVKQPE  480
TMRQPEMMRQ SETVRQPEMV KQPETLKQPE MVDPKAEGII DPKDADMLEF DRFVAQGCLT  540
TDYLDKSKGV KIAPGAQGAT ASQKKKQLPT VGKSIPVFRA PVTMKKTKAL ASPGATFPSA  600
VTSSGLVGTG NAGVLSKAIY RKPPGPGTTG KQNRCQEIMA QKQHAMNSNS SAMARNAAPG  660
AGTPARNVAP GVGTPARNAA PATGIPAKSV APATGTLPAR NTAPATGTPP VRNTAPGTGT  720
PPVRSTAPGT GTPPVRSTAP GTGTPPVRNT APPVRNMAPG TGTPPVRNMA PGTGTPLSRN  780
SLTGTGTPPA RNSLTSTGTP PARNAASVTG APPARNLLTG TGTPPAIRQH NPVMNGASKG  840
NPPASQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708180.0AK370818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2117I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186657.10.0mucin-5AC-like isoform X2
TrEMBLF2E3U40.0F2E3U4_HORVV; Predicted protein (Fragment)
STRINGMLOC_66753.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-25MYB_related family protein