PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66662.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 297aa    MW: 33073.8 Da    PI: 5.6192
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66662.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-144289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed ll+  ++++G g+W+  a   g++Rt+k+c++rw++yl
     MLOC_66662.1 42 RGPWTMDEDALLAGHIAKHGEGRWNELACAAGLRRTGKSCRLRWLNYL 89
                     89********************************************97 PP
2Myb_DNA-binding53.17.2e-1795138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E++l+++++ ++G++ W++Iar+m+ gRt++++k++w++
     MLOC_66662.1  95 RGDFTPQEQLLILELHFRWGNR-WSRIAREMP-GRTDNEIKNYWRT 138
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-213792IPR009057Homeodomain-like
PROSITE profilePS5129415.0713789IPR017930Myb domain
SuperFamilySSF466891.87E-2939136IPR009057Homeodomain-like
SMARTSM007171.1E-94191IPR001005SANT/Myb domain
PfamPF002493.9E-134289IPR001005SANT/Myb domain
CDDcd001671.10E-74489No hitNo description
PROSITE profilePS5129422.11190144IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2393143IPR009057Homeodomain-like
SMARTSM007171.2E-1494142IPR001005SANT/Myb domain
PfamPF002492.2E-1595138IPR001005SANT/Myb domain
CDDcd001673.85E-1198138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDHLDYFGST GMDAVWTGTS CGWPAAAATT GGEEAVDQNL RRGPWTMDED ALLAGHIAKH  60
GEGRWNELAC AAGLRRTGKS CRLRWLNYLR PDVRRGDFTP QEQLLILELH FRWGNRWSRI  120
AREMPGRTDN EIKNYWRTRV QKHAKQLRCD VDSRQFRDVM RHLWMPRLVE RIHAAAAAAP  180
APSMERAASP MYHSPDTTAV TTSSTAGSSV SLEVQFPSNQ LVLTAGSATN WSGSGSEQCG  240
SGSGSARSDD MFDGSWSELL ARACDDGADS VVFPDFEFGE SIDDKWSLED ILLQQQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-253314218126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66662.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644280.0FN564428.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0091b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193528.11e-173transcription factor MYB108-like
TrEMBLA0A287MAZ80.0A0A287MAZ8_HORVV; Uncharacterized protein
STRINGMLOC_66662.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-73myb domain protein 112