PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 388aa MW: 41896.8 Da PI: 6.8327 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl MLOC_66577.1 32 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 79 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++ MLOC_66577.1 85 RGAFSPHEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 128 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.149 | 27 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-22 | 28 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-28 | 30 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 32 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.48E-9 | 35 | 79 | No hit | No description |
PROSITE profile | PS51294 | 24.1 | 80 | 134 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 83 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-15 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 85 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.99E-11 | 87 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MRKPVECPAT KCSGGVAPGN SNVAAAAAKL RKGLWSPEED ERLVAYMLRS GQGSWSDVAR 60 NAGLQRCGKS CRLRWINYLR PDLKRGAFSP HEEDLIVNLH AILGNRWSQI AARLPGRTDN 120 EIKNFWNSTI KKRLKMNSAA SSPATTECAS PPEPNLDGGS ASCLDLTSQE DGSHHAMKSM 180 WMDSSSSSSS SSSMQQGSRP STMAPAANRG YGGLLLPLPD QVCGVAPSTH TSLPPFFQDH 240 SSFKQVSPLR TGGYYPHGMA MEGAGGCFMG EEAVGGGGER SVVFNVPPLL EPMAVALQDQ 300 TLMASTGNSN NNHRNTNSTA EGTTLSSKNG CNINDDNTSK NNINSVVSYW EQHGQQQHMS 360 RNVVMGEWDL EELMKDVSCL PFLDFQVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 29 | 134 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66577.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY672068 | 0.0 | AY672068.1 Hordeum vulgare subsp. vulgare myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177941.1 | 0.0 | anthocyanin regulatory C1 protein-like | ||||
TrEMBL | A0A287QRC9 | 0.0 | A0A287QRC9_HORVV; Uncharacterized protein | ||||
TrEMBL | Q5Y5S5 | 0.0 | Q5Y5S5_HORVV; Myb transcription factor | ||||
STRING | MLOC_66577.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9821 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 1e-64 | myb domain protein 46 |