PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66577.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 388aa    MW: 41896.8 Da    PI: 6.8327
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66577.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-153279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
     MLOC_66577.1 32 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 79
                     678*******************************************97 PP

2Myb_DNA-binding50.83.7e-1685128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++
     MLOC_66577.1  85 RGAFSPHEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 128
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1492779IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-222882IPR009057Homeodomain-like
SuperFamilySSF466891.88E-2830126IPR009057Homeodomain-like
SMARTSM007172.1E-103181IPR001005SANT/Myb domain
PfamPF002492.9E-133279IPR001005SANT/Myb domain
CDDcd001678.48E-93579No hitNo description
PROSITE profilePS5129424.180134IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2583134IPR009057Homeodomain-like
SMARTSM007173.0E-1584132IPR001005SANT/Myb domain
PfamPF002494.9E-1485128IPR001005SANT/Myb domain
CDDcd001675.99E-1187127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MRKPVECPAT KCSGGVAPGN SNVAAAAAKL RKGLWSPEED ERLVAYMLRS GQGSWSDVAR  60
NAGLQRCGKS CRLRWINYLR PDLKRGAFSP HEEDLIVNLH AILGNRWSQI AARLPGRTDN  120
EIKNFWNSTI KKRLKMNSAA SSPATTECAS PPEPNLDGGS ASCLDLTSQE DGSHHAMKSM  180
WMDSSSSSSS SSSMQQGSRP STMAPAANRG YGGLLLPLPD QVCGVAPSTH TSLPPFFQDH  240
SSFKQVSPLR TGGYYPHGMA MEGAGGCFMG EEAVGGGGER SVVFNVPPLL EPMAVALQDQ  300
TLMASTGNSN NNHRNTNSTA EGTTLSSKNG CNINDDNTSK NNINSVVSYW EQHGQQQHMS  360
RNVVMGEWDL EELMKDVSCL PFLDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272913424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6720680.0AY672068.1 Hordeum vulgare subsp. vulgare myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177941.10.0anthocyanin regulatory C1 protein-like
TrEMBLA0A287QRC90.0A0A287QRC9_HORVV; Uncharacterized protein
TrEMBLQ5Y5S50.0Q5Y5S5_HORVV; Myb transcription factor
STRINGMLOC_66577.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-64myb domain protein 46