PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_66546.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 367aa MW: 39065.3 Da PI: 5.5788

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_66546.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.9	2.9e-15	288	331	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+ N++L k+ MLOC_66546.3 288 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKDLNEELVKK 331 79*************************************88764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.3E-15	284	348	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	286	331	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.98E-24	288	339	No hit	No description
SuperFamily	SSF57959	3.52E-11	288	342	No hit	No description
Pfam	PF00170	4.5E-13	288	331	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-15	288	346	No hit	No description
PROSITE pattern	PS00036	0	291	306	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MLKEGRWGGP EGVMDFRSSN GGSSSERRPA AEGASLTRQG SIYSLTFEEF QSTLGGGAGV 60 GGGDLGKDFS SMNMDELLRS IWTAEESQAM AASASGAGAD APPMSLQGQG SLTLPRTLSA 120 KTVDEVWRNL VRDDPLPVGA EGAEPQPHRQ ATLGEMTLEE FLVKAGVVRE IPTAPAVPPP 180 PMQPRPVPVA PKGATFYGNF PSANDVGTAA LGFPPVAMGD LALGNGLMPR ALGMGGAPLV 240 VQTAVKPVDS GSKGSEDLSS PSEPMPYSFE GIVRGRRTGG GVEKVVERRQ RRMIKNRESA 300 ARSRARKQAY TMELEAEVQK LKDLNEELVK KQVAFLQTTD MLNVQLQCIL CRGFIAYTHS 360 EVDSFTR

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MLKEGRWGGP EGVMDFRSSN GGSSSERRPA AEGASLTRQG SIYSLTFEEF QSTLGGGAGV  60
GGGDLGKDFS SMNMDELLRS IWTAEESQAM AASASGAGAD APPMSLQGQG SLTLPRTLSA  120
KTVDEVWRNL VRDDPLPVGA EGAEPQPHRQ ATLGEMTLEE FLVKAGVVRE IPTAPAVPPP  180
PMQPRPVPVA PKGATFYGNF PSANDVGTAA LGFPPVAMGD LALGNGLMPR ALGMGGAPLV  240
VQTAVKPVDS GSKGSEDLSS PSEPMPYSFE GIVRGRRTGG GVEKVVERRQ RRMIKNRESA  300
ARSRARKQAY TMELEAEVQK LKDLNEELVK KQVAFLQTTD MLNVQLQCIL CRGFIAYTHS  360
EVDSFTR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_66546.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371351	0.0	AK371351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131L24.
GenBank	AK373571	0.0	AK373571.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035D19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177660.1	0.0	bZIP transcription factor TRAB1-like isoform X1
Swissprot	Q6ZDF3	5e-93	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	M0Y7S4	0.0	M0Y7S4_HORVV; Uncharacterized protein
STRING	MLOC_66546.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	8e-29	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]