PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_66546.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 367aa MW: 39332.7 Da PI: 9.6087 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42.8 | 1.1e-13 | 288 | 338 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+ N++L k+ e+ k+ MLOC_66546.2 288 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKDLNEELVKKQTEILKM 338 79*************************************888776665554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.0E-11 | 284 | 342 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.576 | 286 | 337 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.8E-13 | 288 | 334 | No hit | No description |
Pfam | PF00170 | 1.0E-11 | 288 | 338 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.73E-23 | 288 | 340 | No hit | No description |
SuperFamily | SSF57959 | 1.88E-10 | 288 | 334 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 291 | 306 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MLKEGRWGGP EGVMDFRSSN GGSSSERRPA AEGASLTRQG SIYSLTFEEF QSTLGGGAGV 60 GGGDLGKDFS SMNMDELLRS IWTAEESQAM AASASGAGAD APPMSLQGQG SLTLPRTLSA 120 KTVDEVWRNL VRDDPLPVGA EGAEPQPHRQ ATLGEMTLEE FLVKAGVVRE IPTAPAVPPP 180 PMQPRPVPVA PKGATFYGNF PSANDVGTAA LGFPPVAMGD LALGNGLMPR ALGMGGAPLV 240 VQTAVKPVDS GSKGSEDLSS PSEPMPYSFE GIVRGRRTGG GVEKVVERRQ RRMIKNRESA 300 ARSRARKQAY TMELEAEVQK LKDLNEELVK KQTEILKMQK REQAPEMKDQ FGRKKRQCLR 360 RTLTGPW |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_66546.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK371351 | 0.0 | AK371351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131L24. | |||
GenBank | AK373571 | 0.0 | AK373571.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035D19. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177660.1 | 0.0 | bZIP transcription factor TRAB1-like isoform X1 | ||||
Swissprot | Q6ZDF3 | 1e-105 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | M0Y7S3 | 0.0 | M0Y7S3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66546.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19290.2 | 8e-29 | ABRE binding factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|