PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_66539.6

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 396aa MW: 43555.2 Da PI: 7.0212

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_66539.6	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.7e-29	292	343	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ MLOC_66539.6 292 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 343 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.746	282	363	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-26	295	343	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MFSQICNEGR QSALVEILEI LTVVCEEHKL PLAQTWVPCK YRSVLAHGGG VKKSCLSFDG 60 SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQKGQGV SGKAFIYHRP CFSKDISQFC 120 KLEYPLVHYA RMFGLAGCFA ICLQSPYTGD DYYMLEFFLP PSCKDEDDQN ALLESILGLI 180 NQCLRNLKVA GNGESNEASL QLSNVIRIEN EDFKTVHFEN SEGFHESPEG DTHGGAHEFD 240 KGNSKVSEGH LLADDNSQNN GTSVSRPNGS AASDSSLLHK NSKPPERRRG KAEKTISLEV 300 LQQYFSGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KQVIESVQGS 360 DAAFNLTSIT GPLPTIPVGP SSDSFNKEKA SESKAE

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MFSQICNEGR QSALVEILEI LTVVCEEHKL PLAQTWVPCK YRSVLAHGGG VKKSCLSFDG  60
SCMGEVCMST SDVAFHVIDA HMWGFRDACV EHHLQKGQGV SGKAFIYHRP CFSKDISQFC  120
KLEYPLVHYA RMFGLAGCFA ICLQSPYTGD DYYMLEFFLP PSCKDEDDQN ALLESILGLI  180
NQCLRNLKVA GNGESNEASL QLSNVIRIEN EDFKTVHFEN SEGFHESPEG DTHGGAHEFD  240
KGNSKVSEGH LLADDNSQNN GTSVSRPNGS AASDSSLLHK NSKPPERRRG KAEKTISLEV  300
LQQYFSGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLSKL KQVIESVQGS  360
DAAFNLTSIT GPLPTIPVGP SSDSFNKEKA SESKAE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_66539.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE996522	0.0	HE996522.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58235.
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163903.1	0.0	protein NLP3-like
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A287KNM3	0.0	A0A287KNM3_HORVV; Uncharacterized protein
TrEMBL	A0A287KNP5	0.0	A0A287KNP5_HORVV; Uncharacterized protein
STRING	Traes_3AS_E01675F4E.1	0.0	(Triticum aestivum)
STRING	Traes_3DS_E1D759A90.1	0.0	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-147	Nin-like family protein