PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_66539.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 540aa MW: 59383.9 Da PI: 6.5835

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_66539.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.6e-29	399	450	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ MLOC_66539.3 399 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 450 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.746	389	470	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-26	402	450	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MMYMFSVDGD NAGELGLPGR VYKQKVPEWT PNVQYYSSTE YPRLNHAISY NVHGTVALPV 60 FDPSVQSCIA VVELIMTSKK INYADEVDKV CKALEAVNLK STEILEHPNV QICNEGRQSA 120 LVEILEILTV VCEEHKLPLA QTWVPCKYRS VLAHGGGVKK SCLSFDGSCM GEVCMSTSDV 180 AFHVIDAHMW GFRDACVEHH LQKGQGVSGK AFIYHRPCFS KDISQFCKLE YPLVHYARMF 240 GLAGCFAICL QSPYTGDDYY MLEFFLPPSC KDEDDQNALL ESILGLINQC LRNLKVAGNG 300 ESNEASLQLS NVIRIENEDF KTVHFENSEG FHESPEGDTH GGAHEFDKGN SKVSEGHLLA 360 DDNSQNNGTS VSRPNGSAAS DSSLLHKNSK PPERRRGKAE KTISLEVLQQ YFSGSLKNAA 420 KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKQV IESVQGSDAA FNLTSITGPL 480 PTIPVGPSSD SFNKEKASES KAEHSNRAVD GDRDSSLQKS QENGSHFGGL MSQQGFADTG

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MMYMFSVDGD NAGELGLPGR VYKQKVPEWT PNVQYYSSTE YPRLNHAISY NVHGTVALPV  60
FDPSVQSCIA VVELIMTSKK INYADEVDKV CKALEAVNLK STEILEHPNV QICNEGRQSA  120
LVEILEILTV VCEEHKLPLA QTWVPCKYRS VLAHGGGVKK SCLSFDGSCM GEVCMSTSDV  180
AFHVIDAHMW GFRDACVEHH LQKGQGVSGK AFIYHRPCFS KDISQFCKLE YPLVHYARMF  240
GLAGCFAICL QSPYTGDDYY MLEFFLPPSC KDEDDQNALL ESILGLINQC LRNLKVAGNG  300
ESNEASLQLS NVIRIENEDF KTVHFENSEG FHESPEGDTH GGAHEFDKGN SKVSEGHLLA  360
DDNSQNNGTS VSRPNGSAAS DSSLLHKNSK PPERRRGKAE KTISLEVLQQ YFSGSLKNAA  420
KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKQV IESVQGSDAA FNLTSITGPL  480
PTIPVGPSSD SFNKEKASES KAEHSNRAVD GDRDSSLQKS QENGSHFGGL MSQQGFADTG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_66539.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE996522	0.0	HE996522.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58235.
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163903.1	0.0	protein NLP3-like
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A287KNP5	0.0	A0A287KNP5_HORVV; Uncharacterized protein
STRING	Traes_3DS_E1D759A90.1	0.0	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein