PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66539.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Nin-like
Protein Properties Length: 314aa    MW: 35023.8 Da    PI: 7.9541
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66539.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.53.1e-29230280151
        RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                   aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki++
  MLOC_66539.2 230 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINK 280
                   589**********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.448220302IPR003035RWP-RK domain
PfamPF020422.2E-26233280IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGEVCMSTSD VAFHVIDAHM WGFRDACVEH HLQKGQGVSG KAFIYHRPCF SKDISQFCKL  60
EYPLVHYARM FGLAGCFAIC LQSPYTGDDY YMLEFFLPPS CKDEDDQNAL LESILGLINQ  120
CLRNLKVAGN GESNEASLQL SNVIRIENED FKTVHFENSE GFHESPEGDT HGGAHEFDKG  180
NSKVSEGHLL ADDNSQNNGT SVSRPNGSAA SDSSLLHKNS KPPERRRGKA EKTISLEVLQ  240
QYFSGSLKNA AKSLGVCPTT MKRICRQHGI SRWPSRKINK ALSLLFPLVL HQILSIRRKQ  300
VKVKQNIQIV LLTV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66539.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9965220.0HE996522.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58235.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163903.10.0protein NLP3-like
SwissprotQ5NB821e-164NLP3_ORYSJ; Protein NLP3
TrEMBLA0A453EJ980.0A0A453EJ98_AEGTS; Uncharacterized protein
STRINGMLOC_66539.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-92Nin-like family protein