PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66537.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 120aa MW: 13607.4 Da PI: 7.7688 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.2 | 3e-10 | 3 | 37 | 96 | 128 |
NAM 96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MLOC_66537.2 3 DGRHKGCKKILVLYinFGKTRKAEKTNWVMHQYHL 37 56789*********766899**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 16.068 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-11 | 3 | 56 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-4 | 8 | 37 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MVDGRHKGCK KILVLYINFG KTRKAEKTNW VMHQYHLGDL EDEKEGELIV SKVFYQTQPR 60 QSAAATTSTL LHEPSTAAAV QMLRQQHQML KQGDEMNKGN EGQDQQQQKF DHSPAGLEGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66537.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN564430 | 1e-92 | FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b. | |||
GenBank | HG670306 | 1e-92 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156234.1 | 6e-63 | NAC domain-containing protein 73-like | ||||
Refseq | XP_020156242.1 | 6e-63 | NAC domain-containing protein 73-like | ||||
Swissprot | Q9M0F8 | 1e-30 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A287LZT7 | 4e-84 | A0A287LZT7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66537.1 | 6e-83 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 3e-25 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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