PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66537.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 292aa    MW: 33115.5 Da    PI: 8.694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66537.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.68.5e-35451872128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............tksg 81 
                   p+G++F+Ptd+el+ e+L+ kv ++ ++l +    +i+   +i++++P++Lp  v+++ ++ +fF++ +k+y+tg+rk+r+             ++ 
  MLOC_66537.1  45 PAGVKFDPTDQELL-EHLESKVMKNAHTLIDdfipTIEGEdGICYTHPEKLP-GVTKNGQSKHFFHRPSKAYTTGTRKRRKihaeselsnsknGAET 139
                   89************.99****999995553322223555545**********.555667899******************87889888886654467 PP

           NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   +W++tgk++++++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MLOC_66537.1 140 RWHKTGKTRPLMV-DGRHKGCKKILVLYinFGKTRKAEKTNWVMHQYHL 187
                   8************.999***********766899*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3537206IPR003441NAC domain
PROSITE profilePS5100531.7544206IPR003441NAC domain
PfamPF023658.6E-1645187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEKGHPEYSK SMIDAKHQEQ GFFFSQRCTN CGHELDYKPD MVGFPAGVKF DPTDQELLEH  60
LESKVMKNAH TLIDDFIPTI EGEDGICYTH PEKLPGVTKN GQSKHFFHRP SKAYTTGTRK  120
RRKIHAESEL SNSKNGAETR WHKTGKTRPL MVDGRHKGCK KILVLYINFG KTRKAEKTNW  180
VMHQYHLGDL EDEKEGELIV SKVFYQTQPR QSAAATTSTL LHEPSTAAAV QMLRQQHQML  240
KQGDEMNKGN EGQDQQQQKF DHSPAGLEGL IMACKSASTK EVSFLIKGLV NF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66537.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644301e-178FN564430.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0464b.
GenBankHG6703061e-178HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156234.10.0NAC domain-containing protein 73-like
RefseqXP_020156242.10.0NAC domain-containing protein 73-like
SwissprotQ9M0F81e-104NAC75_ARATH; NAC domain-containing protein 75
TrEMBLM0Y7Q70.0M0Y7Q7_HORVV; Uncharacterized protein
STRINGMLOC_66537.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.16e-99NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]