PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66387.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 409aa    MW: 44070.3 Da    PI: 8.4299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66387.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.82.8e-3094191192
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +
  MLOC_66387.1  94 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSAANEKGLLLNFEDSAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGaGEaARHR 190
                   89***************************955556888*************************************************6534444444 PP

                   . CS
            B3  92 l 92 
                   l
  MLOC_66387.1 191 L 191
                   4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-4185200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-2991199IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-2592181No hitNo description
SMARTSM010194.7E-2194195IPR003340B3 DNA binding domain
PROSITE profilePS5086314.55194197IPR003340B3 DNA binding domain
PfamPF023621.1E-2794197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEFTATSSRF SKGEEEVEEE QEEASMREIP FMTPAAATCA AAPPSASASA STPASASGSS  60
PPFRSGDDAG ASGSGAGDGS RSNVAEAVEK EHMFDKVVTP SDVGKLNRLV IPKQYAEKYF  120
PLDSAANEKG LLLNFEDSAG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKR LDAGDTVSFS  180
RGAGEAARHR LFIDWKRRAD TRDPLRLPRL PLPMPLTSHY SPWGLGAGAR GFFMPPSPPA  240
TLYEHRLRQG FDFRGMNPSY PTMGRQVILF GSAARMPPHG PAPLLVPRPP PPLHFTVQQQ  300
GSDAGGSVTA GSPVVLDSVP VIESPTTATK KRVRLFGVNL DNPQHPGDGG GESSNYGSAL  360
PLQMPASAWR PRDHTLRLLE FPSHGAEASS PSSSSSSKRE AHSGLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-61891983113B3 domain-containing transcription factor NGA1
5os9_B5e-61891983113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-168CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKJ8320751e-168KJ832075.1 Oryza sativa Indica Group cultivar Nagina 22 B3 transcription factor ngatha 3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155376.10.0B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-156Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A287UH360.0A0A287UH36_HORVV; Uncharacterized protein
STRINGMLOC_66387.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.17e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]