PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66099.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HB-other
Protein Properties Length: 270aa    MW: 29472.6 Da    PI: 8.4303
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66099.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.43.3e-1028602254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54
                  +ryp+  +++ LAk++gLt +qV++WF N R +
  MLOC_66099.2 28 CRYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 60
                  89*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-41668IPR001356Homeobox domain
CDDcd000862.31E-112865No hitNo description
SuperFamilySSF466899.84E-132872IPR009057Homeodomain-like
PROSITE profilePS5007111.1592964IPR001356Homeobox domain
PfamPF059201.1E-133060IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.601.1E-173068IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTGTSPLPGF VLHSFSTGIR LIFGLKPCRY PTDGDKQMLA KQTGLTRNQV SNWFINARVR  60
LWKPMVEEIH NLEMRQVHKQ SPHDNGSQHG VHGHAHQPSS QQQQQQRSGK RSEPCDSHLG  120
QCSGVTRNHH HHSNPAASSH GGGFPDDLSQ MSHSMQQGQV TFAGYGALPS QSQQHQHQHQ  180
HSSMASPQHP HHQHHVGAAG AGNGGGVSLT LGLHQNNRVC FGEPLPANLA HRFGLEDVVS  240
DPYVMGSFGG GQDRHFAKEI GGHLLHDFVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66099.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3595730.0AK359573.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099E23.
GenBankAK3672060.0AK367206.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052O20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175344.11e-111BEL1-like homeodomain protein 9
TrEMBLM0Y6A90.0M0Y6A9_HORVV; Uncharacterized protein
STRINGMLOC_66099.11e-171(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-22BEL1-like homeodomain 8