PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66083.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 318aa    MW: 35251.2 Da    PI: 6.3477
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66083.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.41e-51161581128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                   +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++               + +++++ewyfFs +d+ky++g+r+nrat++g+
  MLOC_66083.1  16 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcgggrggrgarqvpEDDQTSSEWYFFSFKDRKYPSGTRTNRATAAGF 111
                   69****************************.99**************955899999988875442222445************************** PP

           NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   Wkatg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  MLOC_66083.1 112 WKATGRDKPVTSSrSRGVIGMRKTLVFYRGRAPSGQKTDWIIHEYRL 158
                   ***********9856678***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-558179IPR003441NAC domain
PROSITE profilePS5100556.50616179IPR003441NAC domain
PfamPF023655.9E-2717158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLAMEQQHHE QEESCVPPGF RFHPTEEELV GYYLARKVAA QKIDLDIIQE VDLYRIEPWD  60
LQERCGGGRG GRGARQVPED DQTSSEWYFF SFKDRKYPSG TRTNRATAAG FWKATGRDKP  120
VTSSRSRGVI GMRKTLVFYR GRAPSGQKTD WIIHEYRLQT NEHAPTQEEG WVVCRAFQKP  180
TPNQRSSYIF PAYAAAPGLG GYYDTRPWLH GQGGDLHYLQ TAAGAAGAGT LGFPGQGIQY  240
SDDVLESKQS LLGSIPQLIE SPPTISTTVA GCGDAGYDMV QQGQAAASID WNFLDSLLST  300
SQLHEYSATA ASHLHLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-5121791168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677890.0AK367789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184116.10.0NAC domain-containing protein 30-like
RefseqXP_020184117.10.0NAC domain-containing protein 30-like
TrEMBLM0Y6940.0M0Y694_HORVV; Uncharacterized protein
STRINGMLOC_66083.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-81vascular related NAC-domain protein 7