PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65998.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 305aa    MW: 33510.6 Da    PI: 8.504
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65998.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10126156434
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                   +k err+++NReAA++sR+RKka++++Le+ 
  MLOC_65998.6 126 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 156
                   799*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-7123199IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289125169IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-7125169No hitNo description
SuperFamilySSF579592.74E-7126170No hitNo description
CDDcd147081.77E-21127179No hitNo description
PfamPF001701.7E-7127162IPR004827Basic-leucine zipper domain
PROSITE patternPS000360130145IPR004827Basic-leucine zipper domain
PfamPF141441.0E-30208282IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPHPQQLHSG GNSQSVGSTT DSSSARNTMA QMELVSPAGP AGSVRPSPSS TTSEQQQQQQ  60
RQEVMMVTTD DYSYKPGLPP PAAAGLAAAA PSFQPHHQHQ LQLHGGGDHD KRKHGSTRKD  120
GKLVDSKTER RLAQNREAAK KSRLRKKAYV QNLETSRVRL QQMEQELQRA RSQGIFLGGC  180
GAGGDMSPGA AMFDMEYARW LDDDGKRLAE LRGGLQAHLA DSNLGAVVEE CMQHYDELFQ  240
LKAELARSDV FHLLTGAWAT PAERCFFWMG GFRPSELLKV IATPYILLSS SSHALHLHLH  300
LHPHP
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65998.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3663980.0AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190193.11e-161transcription factor LG2-like isoform X4
SwissprotO490671e-142LG2_MAIZE; Transcription factor LG2
SwissprotQ5N7C71e-142LG2_ORYSJ; Transcription factor LG2
TrEMBLA0A287M0J30.0A0A287M0J3_HORVV; Uncharacterized protein
STRINGMLOC_65998.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.25e-77bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  4. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  5. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]