PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_65998.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 569aa MW: 61532.8 Da PI: 6.911

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_65998.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.4e-10	256	286	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k err+++NReAA++sR+RKka++++Le+ MLOC_65998.4 256 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 286 799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-7	253	329	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.0E-7	255	299	No hit	No description
PROSITE profile	PS50217	9.289	255	299	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.75E-7	256	300	No hit	No description
Pfam	PF00170	3.8E-7	257	291	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.35E-21	257	309	No hit	No description
PROSITE pattern	PS00036	0	260	275	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.8E-30	338	411	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MVQGEEASCS WRMASAHDHA VHLSHQAALA YHGGLQLQPH HHAASAAPSA SFLDFQPAAA 60 AAYFGELEEA LIHGANAGVA DHLHHNPGGM IAGDAHAKSA AAAAGGGGGY LQAGAGAGRP 120 PTLEIFPSWP MPHPQQLHSG GNSQSVGSTT DSSSARNTMA QMELVSPAGP AGSVRPSPSS 180 TTSEQQQQQQ RQEVMMVTTD DYSYKPGLPP PAAAGLAAAA PSFQPHHQHQ LQLHGGGDHD 240 KRKHGSTRKD GKLVDSKTER RLAQNREAAK KSRLRKKAYV QNLETSRVRL QQMEQELQRA 300 RSQGIFLGGC GAGGDMSPGA AMFDMEYARW LDDDGKRLAE LRGGLQAHLA DSNLGAVVEE 360 CMQHYDELFQ LKAELARSDV FHLLTGAWAT PAERCFFWMG GFRPSELLKI LIGQLDPLTE 420 QQMMGICGLQ HSSEQAEEAL AQGLQQLHQS LADTVAAGTL SDGTPGPNYM GIMAMALEKL 480 ASLESFYQQA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY YRRLRALSSL WASRPRDNFI 540 GTESLSPTGT ELQGMQQHHQ PQQNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MVQGEEASCS WRMASAHDHA VHLSHQAALA YHGGLQLQPH HHAASAAPSA SFLDFQPAAA  60
AAYFGELEEA LIHGANAGVA DHLHHNPGGM IAGDAHAKSA AAAAGGGGGY LQAGAGAGRP  120
PTLEIFPSWP MPHPQQLHSG GNSQSVGSTT DSSSARNTMA QMELVSPAGP AGSVRPSPSS  180
TTSEQQQQQQ RQEVMMVTTD DYSYKPGLPP PAAAGLAAAA PSFQPHHQHQ LQLHGGGDHD  240
KRKHGSTRKD GKLVDSKTER RLAQNREAAK KSRLRKKAYV QNLETSRVRL QQMEQELQRA  300
RSQGIFLGGC GAGGDMSPGA AMFDMEYARW LDDDGKRLAE LRGGLQAHLA DSNLGAVVEE  360
CMQHYDELFQ LKAELARSDV FHLLTGAWAT PAERCFFWMG GFRPSELLKI LIGQLDPLTE  420
QQMMGICGLQ HSSEQAEEAL AQGLQQLHQS LADTVAAGTL SDGTPGPNYM GIMAMALEKL  480
ASLESFYQQA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY YRRLRALSSL WASRPRDNFI  540
GTESLSPTGT ELQGMQQHHQ PQQNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_65998.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366398	0.0	AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190189.1	0.0	transcription factor LG2-like isoform X1
Refseq	XP_020190190.1	0.0	transcription factor LG2-like isoform X1
Refseq	XP_020190191.1	0.0	transcription factor LG2-like isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	F2DR80	0.0	F2DR80_HORVV; Predicted protein
STRING	MLOC_65998.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-124	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]