PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65998.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 569aa MW: 61532.8 Da PI: 6.911 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.1 | 2.4e-10 | 256 | 286 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k err+++NReAA++sR+RKka++++Le+ MLOC_65998.3 256 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 286 799*************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.9E-7 | 253 | 329 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.0E-7 | 255 | 299 | No hit | No description |
PROSITE profile | PS50217 | 9.289 | 255 | 299 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.75E-7 | 256 | 300 | No hit | No description |
Pfam | PF00170 | 3.8E-7 | 257 | 291 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 3.35E-21 | 257 | 309 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 260 | 275 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.8E-30 | 338 | 411 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MVQGEEASCS WRMASAHDHA VHLSHQAALA YHGGLQLQPH HHAASAAPSA SFLDFQPAAA 60 AAYFGELEEA LIHGANAGVA DHLHHNPGGM IAGDAHAKSA AAAAGGGGGY LQAGAGAGRP 120 PTLEIFPSWP MPHPQQLHSG GNSQSVGSTT DSSSARNTMA QMELVSPAGP AGSVRPSPSS 180 TTSEQQQQQQ RQEVMMVTTD DYSYKPGLPP PAAAGLAAAA PSFQPHHQHQ LQLHGGGDHD 240 KRKHGSTRKD GKLVDSKTER RLAQNREAAK KSRLRKKAYV QNLETSRVRL QQMEQELQRA 300 RSQGIFLGGC GAGGDMSPGA AMFDMEYARW LDDDGKRLAE LRGGLQAHLA DSNLGAVVEE 360 CMQHYDELFQ LKAELARSDV FHLLTGAWAT PAERCFFWMG GFRPSELLKI LIGQLDPLTE 420 QQMMGICGLQ HSSEQAEEAL AQGLQQLHQS LADTVAAGTL SDGTPGPNYM GIMAMALEKL 480 ASLESFYQQA DNLRQQTLHQ MRRILTTRQA ARCFLSIGEY YRRLRALSSL WASRPRDNFI 540 GTESLSPTGT ELQGMQQHHQ PQQNQFSGF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65998.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366398 | 0.0 | AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190189.1 | 0.0 | transcription factor LG2-like isoform X1 | ||||
Refseq | XP_020190190.1 | 0.0 | transcription factor LG2-like isoform X1 | ||||
Refseq | XP_020190191.1 | 0.0 | transcription factor LG2-like isoform X2 | ||||
Swissprot | Q5N7C7 | 0.0 | LG2_ORYSJ; Transcription factor LG2 | ||||
TrEMBL | F2DR80 | 0.0 | F2DR80_HORVV; Predicted protein | ||||
STRING | MLOC_65998.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3809 | 31 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-124 | bZIP family protein |
Publications ? help Back to Top | |||
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