PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_65998.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 419aa MW: 44794 Da PI: 6.8432

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_65998.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.4e-11	239	270	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k err+++NReAA++sR+RKka++++Le+ MLOC_65998.2 239 HDKTERRLAQNREAAKKSRLRKKAYVQNLETS 270 589**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-6	237	313	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.2E-8	238	283	No hit	No description
PROSITE profile	PS50217	9.105	239	283	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-8	240	275	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.44E-7	240	284	No hit	No description
CDD	cd14708	2.65E-23	241	293	No hit	No description
PROSITE pattern	PS00036	0	244	259	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.8E-30	322	396	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MVQGEEASCS WRMASAHDHA VHLSHQAALA YHGGLQLQPH HHAASAAPSA SFLDFQPAAA 60 AAYFGELEEA LIHGANAGVA DHLHHNPGGM IAGDAHAKSA AAAAGGGGGY LQAGAGAGRP 120 PTLEIFPSWP MPHPQQLHSG GNSQSVGSTT DSSSARNTMA QMELVSPAGP AGSVRPSPSS 180 TTSEQQQQQQ RQEVMMVTTD DYSYKPGLPP PAAAGLAAAA PSFQPHHQHQ LQLHGGGDHD 240 KTERRLAQNR EAAKKSRLRK KAYVQNLETS RVRLQQMEQE LQRARSQGIF LGGCGAGGDM 300 SPGAAMFDME YARWLDDDGK RLAELRGGLQ AHLADSNLGA VVEECMQHYD ELFQLKAELA 360 RSDVFHLLTG AWATPAERCF FWMGGFRPSE LLKVIATPYI LLSSSSHALH LHLHLHPHP

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MVQGEEASCS WRMASAHDHA VHLSHQAALA YHGGLQLQPH HHAASAAPSA SFLDFQPAAA  60
AAYFGELEEA LIHGANAGVA DHLHHNPGGM IAGDAHAKSA AAAAGGGGGY LQAGAGAGRP  120
PTLEIFPSWP MPHPQQLHSG GNSQSVGSTT DSSSARNTMA QMELVSPAGP AGSVRPSPSS  180
TTSEQQQQQQ RQEVMMVTTD DYSYKPGLPP PAAAGLAAAA PSFQPHHQHQ LQLHGGGDHD  240
KTERRLAQNR EAAKKSRLRK KAYVQNLETS RVRLQQMEQE LQRARSQGIF LGGCGAGGDM  300
SPGAAMFDME YARWLDDDGK RLAELRGGLQ AHLADSNLGA VVEECMQHYD ELFQLKAELA  360
RSDVFHLLTG AWATPAERCF FWMGGFRPSE LLKVIATPYI LLSSSSHALH LHLHLHPHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_65998.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366398	0.0	AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190189.1	0.0	transcription factor LG2-like isoform X1
Refseq	XP_020190190.1	0.0	transcription factor LG2-like isoform X1
Swissprot	Q5N7C7	1e-162	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A287M0J0	0.0	A0A287M0J0_HORVV; Uncharacterized protein
STRING	MLOC_65998.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-72	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]