PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 27810.4 Da PI: 9.8092 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.4 | 4.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fs +g+lyey+s MLOC_65843.1 9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSARGRLYEYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 102 | 8e-34 | 83 | 173 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + +++ qqe+akL+++i +Lq+ +Rhl+G+++++L++keL+ Le++L+ks+ +iRskK+ell ++ie++qk e +lq+en++Lr+k++ MLOC_65843.1 83 IDVNSQQYFQQESAKLRQQILSLQNANRHLMGDSVGNLTVKELKTLENRLDKSIGRIRSKKHELLSAEIEYMQKLEADLQSENMYLRAKVA 173 5667889**********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.969 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.44E-42 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 4.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.9E-27 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.264 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRGRIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFSA RGRLYEYASN 60 STRTTIDRYK KASASSSGSA PAIDVNSQQY FQQESAKLRQ QILSLQNANR HLMGDSVGNL 120 TVKELKTLEN RLDKSIGRIR SKKHELLSAE IEYMQKLEAD LQSENMYLRA KVADAERLAL 180 APASGGGELE VLPTFDARSY YQHQVNMLQD AAAASSSSRY SQSSQPQTAA AAAAATALHL 240 GYEIKGGQAQ LN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 2e-19 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU557049 | 0.0 | EU557049.1 Hordeum vulgare MIKC-type MADS-box transcription factor WM27B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266821.1 | 1e-134 | uncharacterized protein LOC100832541 | ||||
Refseq | XP_010230319.1 | 1e-134 | uncharacterized protein LOC100832541 isoform X1 | ||||
Refseq | XP_024313924.1 | 1e-134 | uncharacterized protein LOC100832541 isoform X1 | ||||
Swissprot | Q8RU31 | 1e-114 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | B2CZ82 | 0.0 | B2CZ82_HORVU; MIKC-type MADS-box transcription factor WM27B | ||||
STRING | MLOC_65843.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 8e-86 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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