PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65829.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 777aa MW: 83628.5 Da PI: 5.7355 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 116 | 172 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ MLOC_65829.2 116 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 172 688999************************************************995 PP | |||||||
2 | START | 187.3 | 7.7e-59 | 293 | 512 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a +++p+W + + ++++e+ + f + ++ +ea+r+ +vv+m++a lve+l+d++ q+ + +a+tl MLOC_65829.2 293 ELAVAAMEELLRMARLDDPLWATTVdqtLALDEEEYARMFIDPRGglgpkqygLVSEASRDATVVIMTPASLVEILMDVN-QYAAVFSsivsRAATL 388 57899********************8776678888888886666679*********************************.66666655555***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 ev+s+g galq+m+ e+q++splvp R+++fvRy+++ +g w++vdvS+d q + +++++pSg+li++ +ng+skvtwvehv++ MLOC_65829.2 389 EVLSTGvagcydGALQVMSVEFQVPSPLVPtRESYFVRYCKRNADGAWAVVDVSLDGLQGV-------KCRRRPSGCLIQEAPNGYSKVTWVEHVEV 478 ********************************************************99985.......699************************** PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 ++r++h+++++lv+sgla+ga++wv l+rqce+ MLOC_65829.2 479 DDRSVHNIYKPLVGSGLAFGARRWVGVLGRQCER 512 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 102 | 171 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-19 | 106 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 113 | 173 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-20 | 114 | 177 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.33E-19 | 115 | 174 | No hit | No description |
Pfam | PF00046 | 6.3E-18 | 116 | 171 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 148 | 171 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.884 | 284 | 515 | IPR002913 | START domain |
CDD | cd08875 | 1.47E-108 | 290 | 511 | No hit | No description |
SuperFamily | SSF55961 | 4.09E-32 | 291 | 514 | No hit | No description |
SMART | SM00234 | 5.7E-52 | 293 | 512 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-50 | 294 | 512 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.0E-4 | 355 | 478 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.55E-24 | 533 | 764 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MMIPARHMPS SMIGRSSGGA PYGSSSALSL GQPNLLDGSN QHLLQHHLLE QIPVRAAESG 60 DNNIGSGGGG VGMIRGRESM DPLGDEFESR SGSENVDGDA VDNAEQDQDP NQRPRKKRYH 120 RHTQHQIQEM EAFFKECPHP DDKQRKELSR ELGLEPLQVK FWFQNKRTQM KNQHERHENS 180 QLRADNDKLR AENMRYKEAL SSASCPNCGG PAALGEMSFD EHHLRVENAR LRDEIDRISA 240 IAAKYVGKPM VPFPVLSSPL AAAPGASAYD VFAGAASVLQ APPDDKQQGV VVELAVAAME 300 ELLRMARLDD PLWATTVDQT LALDEEEYAR MFIDPRGGLG PKQYGLVSEA SRDATVVIMT 360 PASLVEILMD VNQYAAVFSS IVSRAATLEV LSTGVAGCYD GALQVMSVEF QVPSPLVPTR 420 ESYFVRYCKR NADGAWAVVD VSLDGLQGVK CRRRPSGCLI QEAPNGYSKV TWVEHVEVDD 480 RSVHNIYKPL VGSGLAFGAR RWVGVLGRQC ERLASAMASN IPTSDIGVIT SSEGRKSMLK 540 LAERMVASFC GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP 600 VPPKRVFDFL RDETSRSEWD ILSNGGIVQE MAHIANGRDH GNCVSLLRVN STNSNQSNML 660 ILQESCTDAS GSYVIYAPVD VVAMNVVLNG GDPDYVALLP SGFAILPDGP AGTMHAAAGA 720 TGTGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKTAVISN GGASPPQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65829.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361971 | 0.0 | AK361971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001J17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199198.1 | 0.0 | homeobox-leucine zipper protein ROC2-like | ||||
Swissprot | Q0J9X2 | 0.0 | ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2 | ||||
TrEMBL | M0Y5B4 | 0.0 | M0Y5B4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_65829.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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