PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65804.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 443aa    MW: 46763.7 Da    PI: 4.5011
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65804.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.58.5e-091146338
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                  +en   r  t +kR +g+ KKA EL +LC++ v  +
  MLOC_65804.1 11 VENAPARARTHAKRAKGLQKKALELATLCGVPVGFV 46
                  578889999**********************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-6156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.535146IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-15176IPR002100Transcription factor, MADS-box
CDDcd001201.11E-12247No hitNo description
PRINTSPR004046.1E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-81148IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MARRKVAMRL VENAPARART HAKRAKGLQK KALELATLCG VPVGFVCSGA GAGAPPLEWE  60
SEEGVLERYR RAVPPEARAG HTHRAYLETE LAKRRAKLAR ARHGCPAALA DWDEALNDMT  120
LDEARELLEA IDAALRATGD RMEALGLPAD SGHGALDVQV APESSDETVI PEQLGHGGGV  180
PWAEGYPVDM ADAAGFQQLQ MVPFDGGVSD GLLERFPREH GFQMQPGGSG FQCVGGNYSG  240
SGDGMIAPGL ANADYNYSGC GDRMLAPDFA NGGYKYNYSG GGDGMLTLDS ANAVCNYTGG  300
GNGMLVPGFA NAVCNYSAGC DQMLAPGSGN AGYHWPDLTM WNTDQVWDAA MPPGYYPGFA  360
DSTLAPEHCS TEVGTGADYV NTLPSGYGYP MGMGDNFTNL ENNYTAAHWQ AEAFQRSDAS  420
DSTSTSTSTG ELLSAASSPH YLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763980.0AK376398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122M08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158116.10.0uncharacterized protein LOC109743439
TrEMBLA0A287X6860.0A0A287X686_HORVV; Uncharacterized protein
STRINGMLOC_66440.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.43e-09AGAMOUS-like 42