PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 197aa MW: 22871.3 Da PI: 7.6967 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.4 | 1.1e-18 | 79 | 170 | 4 | 90 |
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + YA++ GF vr kks+ +ge +++ +vC + g + ++k + er +++++rt+C ++ vk++ d+ w+vt+++ +HnH+l MLOC_65695.1 79 KMYARQKGFGVRYCFRKKSEASGELIRASLVCHRAGLKINKKVDtpnpqpIALERWRNTTERTNCPTRMFVKRR-DNSWVVTEINDDHNHPLI 170 57***********************************999998878887767777899****************.9***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.7E-17 | 79 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDSYFVAAHD RDRETVGASR TVLHQSANTD QTLDASSNRT PNDDHANEDE GMPEVMSTPQ 60 QPTTMMRFDT LEDAEKHXKM YARQKGFGVR YCFRKKSEAS GELIRASLVC HRAGLKINKK 120 VDTPNPQPIA LERWRNTTER TNCPTRMFVK RRDNSWVVTE INDDHNHPLI KKWSLTGYLR 180 SHRHIPEEEE QFVKLLD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65695.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239385.1 | 9e-37 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M0Z2D2 | 1e-123 | M0Z2D2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_65695.1 | 1e-147 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 3e-12 | FAR1-related sequence 4 |