PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6565.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GeBP
Protein Properties Length: 322aa    MW: 35478.6 Da    PI: 6.529
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6565.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.89.5e-16134222397
       DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  f+r+ws +De+ +L++l   ++++g+ p+   da++e + ++++ + +s+++l  K+++LK+++    kk         +kehd+  f+lsk +W 
  MLOC_6565.1 134 FHRVWSTNDEVRILKALAAHQKEHGVLPQP--DALVEALAGKLDNRaYSSKELQGKVKSLKHRYVSAAKK-----YELPTKEHDRRLFDLSKTVWA 222
                  89***********************77666..5899***999987526899*****************99.....345689**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-20134221IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGKKRGEKRS APPPPPPAAS SEETHSGAHE SEDEETIAVS RTPAPKNPPP PPQKGKESEA  60
SDEDEEEEEE EPSHAAPTTA PKKDPPAARQ SEDSDNSNDD EDGGSGSDKD APPPKPSVKQ  120
QAKGPEVKVP RLAFHRVWST NDEVRILKAL AAHQKEHGVL PQPDALVEAL AGKLDNRAYS  180
SKELQGKVKS LKHRYVSAAK KYELPTKEHD RRLFDLSKTV WARDKSMARA ATAPTAGATA  240
KANNHEPKGF DEMCELYPYL AEEVRKLGAP GMFKREFGKM DDDKARLLDE KIKKQRVAQM  300
KVELHRSDLA REVTKAVMDL ID
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492760.0AK249276.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33f24, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179917.11e-136STOREKEEPER protein-like
TrEMBLA0A287W6F70.0A0A287W6F7_HORVV; Uncharacterized protein
STRINGMLOC_6565.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-07DNA-binding storekeeper protein-related transcriptional regulator