PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65598.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NF-YC | ||||||||
Protein Properties | Length: 136aa MW: 14075 Da PI: 10.0168 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 88.4 | 7.1e-28 | 21 | 109 | 18 | 97 |
NF-YC 18 nhelPlarikkilkade.d........vkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 h+lPlarikki+k d +mis eaPv++s+acelf+ elt +w + e +rrt++ d+aaav td fdflvd+v MLOC_65598.1 21 PHALPLARIKKIMKRSAgDgsggdgagARMISGEAPVVFSRACELFVAELTQAAWAATLEGRRRTVHAEDVAAAVRDTDLFDFLVDVVK 109 599***********753212222233389*********************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.3E-29 | 18 | 96 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.85E-22 | 18 | 104 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-15 | 24 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MRIARPYSGV SRSGATARTG PHALPLARIK KIMKRSAGDG SGGDGAGARM ISGEAPVVFS 60 RACELFVAEL TQAAWAATLE GRRRTVHAED VAAAVRDTDL FDFLVDVVKP RGDDGGGVDA 120 GGRLPPAAPV HRGALD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 9e-29 | 22 | 111 | 16 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65598.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL732345 | 3e-81 | AL732345.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence. | |||
GenBank | CP012612 | 3e-81 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150478.1 | 1e-62 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 6e-28 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | M0Y4E8 | 8e-90 | M0Y4E8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_65598.1 | 1e-90 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11658 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 7e-21 | nuclear factor Y, subunit C3 |