PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_6548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 155aa MW: 16394.4 Da PI: 8.5206 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C++ F+++ L H++ H MLOC_6548.1 45 FACCYCPRKFRSSQALGGHQNAH 67 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.02E-5 | 44 | 71 | No hit | No description |
PROSITE profile | PS50157 | 10.055 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDMGRGMGMG MGMARGMGMD REEGLNLSLS LQRSPSSPPR FQAVFACCYC PRKFRSSQAL 60 GGHQNAHKVQ RNLARRGRDA TTALSLASAA EQGKAALDDD SAPLRPADHD AADAWGGGRV 120 HPPRRQLQGS GAASSSAASG NEELADEMID LNLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_6548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066826 | 6e-52 | BT066826.1 Zea mays full-length cDNA clone ZM_BFb0076P10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581274.2 | 5e-44 | uncharacterized protein LOC100830698 | ||||
TrEMBL | A0A287IJB4 | 1e-105 | A0A287IJB4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_6548.1 | 1e-108 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6992 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 4e-13 | zinc finger protein 2 |