PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_65456.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 356aa MW: 39014.9 Da PI: 8.2048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_65456.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.4	2e-47	17	143	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPt+eel+ +yL + + gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ g r++r+t++g+Wkatg+d+++ s+ + MLOC_65456.1 17 PGFRFHPTEEELLGFYLSRVALGKKLHF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGCGGRPSRTTERGFWKATGSDRAIRSTadPK 112 9***********************99.99***********888999***********************************987777 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLvfykgrap+g+ktdWvm+eyrl MLOC_65456.1 113 RVIGIKKTLVFYKGRAPRGTKTDWVMNEYRL 143 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-57	12	163	IPR003441	NAC domain
PROSITE profile	PS51005	54.273	15	163	IPR003441	NAC domain
Pfam	PF02365	5.6E-24	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAMAAAASTI EVEHDLPGFR FHPTEEELLG FYLSRVALGK KLHFDIIGTL NIYRHDPWDL 60 PGMAKIGERE WYFFVPRDRK AGCGGRPSRT TERGFWKATG SDRAIRSTAD PKRVIGIKKT 120 LVFYKGRAPR GTKTDWVMNE YRLPDTGAAP PKEDTVLCKV YRKATPLKEL EQRAYEMEEV 180 KQRSGGNGGY GYGGAARACP VPTSDTSAVD DYFPSSDDVQ DNFMTPSFSS SSSVAPSGNS 240 SSHDAPRVAK KEADLGRVTV PSTSSVPQSA NTPLRLQLPA VNPPCGLQLP AANHGMSNLS 300 SLPAASHGVL DLPSQQLPAA GNQGVFDWLQ DPFLTQLRSP WQDQHCVSPY AHLLYY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAMAAAASTI EVEHDLPGFR FHPTEEELLG FYLSRVALGK KLHFDIIGTL NIYRHDPWDL  60
PGMAKIGERE WYFFVPRDRK AGCGGRPSRT TERGFWKATG SDRAIRSTAD PKRVIGIKKT  120
LVFYKGRAPR GTKTDWVMNE YRLPDTGAAP PKEDTVLCKV YRKATPLKEL EQRAYEMEEV  180
KQRSGGNGGY GYGGAARACP VPTSDTSAVD DYFPSSDDVQ DNFMTPSFSS SSSVAPSGNS  240
SSHDAPRVAK KEADLGRVTV PSTSSVPQSA NTPLRLQLPA VNPPCGLQLP AANHGMSNLS  300
SLPAASHGVL DLPSQQLPAA GNQGVFDWLQ DPFLTQLRSP WQDQHCVSPY AHLLYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-46	17	165	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-46	17	165	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-46	17	165	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-46	17	165	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-46	17	165	22	170	NAC domain-containing protein 19
3swm_B	2e-46	17	165	22	170	NAC domain-containing protein 19
3swm_C	2e-46	17	165	22	170	NAC domain-containing protein 19
3swm_D	2e-46	17	165	22	170	NAC domain-containing protein 19
3swp_A	2e-46	17	165	22	170	NAC domain-containing protein 19
3swp_B	2e-46	17	165	22	170	NAC domain-containing protein 19
3swp_C	2e-46	17	165	22	170	NAC domain-containing protein 19
3swp_D	2e-46	17	165	22	170	NAC domain-containing protein 19
3ulx_A	2e-46	11	165	10	170	Stress-induced transcription factor NAC1
4dul_A	2e-46	17	165	19	167	NAC domain-containing protein 19
4dul_B	2e-46	17	165	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_65456.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190294.1	0.0	NAC domain-containing protein 72-like
Swissprot	Q10S65	1e-143	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	M0Y3U1	0.0	M0Y3U1_HORVV; Uncharacterized protein
STRING	MLOC_65456.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-86	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]