PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65351.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 370aa    MW: 40530.9 Da    PI: 7.4404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65351.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05188207120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++Cp C k+F+r  n++ H+
  MLOC_65351.2 188 FSCPVCYKTFNRYNNMQMHM 207
                   89*****************9 PP

2zf-C2H214.20.00013272294123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C +Cgk F  + + ++H +++
  MLOC_65351.2 272 FMCRKCGKAFAVRGDWRTHEKNC 294
                   89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.96E-5184210No hitNo description
Gene3DG3DSA:3.30.160.606.5E-6188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576672.08E-6256292No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5268292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808272292IPR007087Zinc finger, C2H2
SMARTSM0035549272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGDPYTNFLR GYSLRYSNAA ASSSSAFPSY TSYLHHPPPS SPPIREALPL LSLTPSSSTQ  60
HHHHQHHDQE DHKVVTTASC SSQTEADDQA AGEVTVALHI GLPSPSPSDA AAGCGDHHQE  120
APAAGGGAAE ERSQQLQEEG QEEGEGEEED GSTMALGVGC ASLGIGRLTK GQYWIPTPSQ  180
ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCYCCASG  240
CRNNVDHPRA RPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC  300
ACGSDFKHKR SLKDHIRAFG RGHAPCGIDC FDLDEDDRDP SSEVDHTVNT AAAATTTNGA  360
GSDRRHWKAN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65351.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3698740.0AK369874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149153.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-127ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLF2E1530.0F2E153_HORVV; Predicted protein
STRINGMLOC_65351.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]