PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65322.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GeBP | ||||||||
Protein Properties | Length: 365aa MW: 40805.6 Da PI: 6.4592 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 39.1 | 2.1e-12 | 175 | 267 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksi..sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 r+ws De+ +L Gl+ +++g+ +++++ ++++i +++ +++ eK+rrL++K++ ++ + p +d+ +e+s+kiWg MLOC_65322.2 175 VRVWSLRDEVGILEGLVAHVETHGS--PPGRSELCDVLHGRIldRKEFTVTEIYEKVRRLRDKYHSMRVA-AVSGAPLRGGVEDRRKYEISHKIWG 267 79*****************999995..4566777777777774446788899**************9999.5555678889999***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.2E-17 | 175 | 267 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSPKRYSARR SWHQLFGSSE RADPFPSPTS TTLPRIPPED EIPLPPPPSL SMIPQSQLPS 60 NSTNLQHSPF NNKSQLAHQT SGEEMEEDKP SQQPGIKNGS SSNEEQVSGS STDEEEEEES 120 SFSPNDGVHK EEEEEEPLAA DISGSHGTDV VAVEENNSPC RRRAKWKGGK PGAYVRVWSL 180 RDEVGILEGL VAHVETHGSP PGRSELCDVL HGRILDRKEF TVTEIYEKVR RLRDKYHSMR 240 VAAVSGAPLR GGVEDRRKYE ISHKIWGDSS PLPNGGKKKG NPYHAQGPRV RRDFEEFRHV 300 YPHLALEVEN IAGKVPLKRV IELIDDAKAS QLNDKVKKQR VLEIKADLDR ASLQGELLSM 360 FIKLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65322.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146998.1 | 1e-130 | probable transcription factor At1g61730 | ||||
TrEMBL | M0Y3C2 | 0.0 | M0Y3C2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_65322.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 4e-08 | DNA-binding storekeeper protein-related transcriptional regulator |