PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65279.13
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 289aa    MW: 31959.6 Da    PI: 6.3057
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65279.13genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.52.3e-31233285153
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                    k r+rWtpeLHe+Fv+av++LGGsekAtPk++ ++mkv+gLt++hvkSHLQ Y
  MLOC_65279.13 233 KSRMRWTPELHEKFVDAVDKLGGSEKATPKAVQKVMKVEGLTIYHVKSHLQVY 285
                    68*************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.52E-16230286IPR009057Homeodomain-like
PROSITE profilePS5129413.499230289IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-27231285IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-24233285IPR006447Myb domain, plants
PfamPF002495.7E-10235285IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSQFRNGEVP RFLSSDINIV PVLSEVIVPS FPEYRTSYSQ RDLCSSSITS FDTLCQPYVS  60
PSNFTSDLRI NNGSPGGKLS FGSHVTAISG CDTSLPSAHS SYTGNPDYLR MAYPKVSEEI  120
RWGQEPLPGV FEYPATIDVS DRRNVIVSQQ SQEIITIDHI THLAEQKEWY SSGSSEQFLR  180
SSGSGGSVLK AADASTTPSN YAYFHGQKNR SNSFNVDELC SDNLPSSDTT PTKSRMRWTP  240
ELHEKFVDAV DKLGGSEKAT PKAVQKVMKV EGLTIYHVKS HLQVYICSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-25233285254Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65279.13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041206e-32AP004120.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1293_E04.
GenBankAP0056916e-32AP005691.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0053L11.
GenBankAP0149586e-32AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126106e-32CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193217.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
RefseqXP_020193218.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
RefseqXP_020193219.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
TrEMBLM0Y3520.0M0Y352_HORVV; Uncharacterized protein
STRINGTRIUR3_02291-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-24phosphate starvation response 1