PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65182.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 299aa    MW: 32484.9 Da    PI: 4.9772
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65182.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y +++d+e++++isw+e+g++fvv+ + ef++++Lpk FkhsnfaSFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll  i+
  MLOC_65182.1  13 FLTKTYAMVDDPETDDTISWNESGTAFVVWRRAEFERDLLPKNFKHSNFASFVRQLNTYGFRKIGLDR---------WEFANECFRKGEKQLLGAIQ 100
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  MLOC_65182.1 101 RRKG 104
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.49E-339102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-539102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.5E-379102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MASPALGAGT PPFLTKTYAM VDDPETDDTI SWNESGTAFV VWRRAEFERD LLPKNFKHSN  60
FASFVRQLNT YGFRKIGLDR WEFANECFRK GEKQLLGAIQ RRKGSGAGAP APAMMATPIA  120
TAIPISPTPT SSGGDPAVSS SPPPGLALVA TGAMALLEEE NARLRRENAR LARELARARR  180
VCDGVRHLVW RYDQGGEEVG VEDERHGAAG GKPMLFGVAI GSKRSREDGH EGGDEENGAE  240
EDGEDDEEEQ EHNDDDDERH AARREQGKSM RTERSDLNVL SLSVRAAAAA RPDGGSRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-27110511123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578730.0AK357873.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063M20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152813.11e-165heat stress transcription factor B-2a-like
SwissprotQ7XRX31e-102HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLF2D1W60.0F2D1W6_HORVV; Predicted protein
STRINGMLOC_65182.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-44HSF family protein
Publications ? help Back to Top
  1. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]