PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65033.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 265aa    MW: 27710.1 Da    PI: 8.3921
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65033.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009593115123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC+ Cg+sF +   L  H  +H
  MLOC_65033.2  93 FKCSVCGRSFGSYQALGGHKTSH 115
                   89********9998888887776 PP
2zf-C2H213.10.0003163185123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++C k F++   L  H r+H
  MLOC_65033.2 163 HRCSICQKEFPTGQALGGHKRKH 185
                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.77E-893115No hitNo description
PfamPF139122.8E-1293116IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.44893120IPR007087Zinc finger, C2H2
SMARTSM003550.0293115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8158185No hitNo description
PfamPF139125.0E-12162187IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078163185IPR007087Zinc finger, C2H2
SMARTSM003550.028163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSSAMEALH ALIPEQQQQR QDWEAVSGAT SGEESGHVLQ GWAKRKRSRR HRSEEENLAL  60
CLLMLSRGGG GGGKQRVQAP QPESFAAPAV AEFKCSVCGR SFGSYQALGG HKTSHRVKLP  120
SPPADAAAAP LVSLPAVAAV LPSAEPATSS TAASSDGATN RVHRCSICQK EFPTGQALGG  180
HKRKHYDGGV GGVAASSTEL LAAAAAESEV GSTGNGSSAA RAFDLNIPAV PEFVWRPCAK  240
GKMMWEDDEE VQSPLAFKKP RLLTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65033.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTWZF1A0.0D16415.1 Triticum aestivum gene for zinc-finger protein WZF1, complete cds.
GenBankWHTWZF1B0.0D16416.1 Triticum aestivum mRNA for zinc-finger protein WZF1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167815.11e-135zinc finger protein 1
SwissprotQ424301e-140ZFP1_WHEAT; Zinc finger protein 1
TrEMBLM0Y2290.0M0Y229_HORVV; Uncharacterized protein
STRINGMLOC_65033.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-28salt tolerance zinc finger