PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 265aa MW: 27710.1 Da PI: 8.3921 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00095 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg+sF + L H +H MLOC_65033.1 93 FKCSVCGRSFGSYQALGGHKTSH 115 89********9998888887776 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r+H MLOC_65033.1 163 HRCSICQKEFPTGQALGGHKRKH 185 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.77E-8 | 93 | 115 | No hit | No description |
Pfam | PF13912 | 2.8E-12 | 93 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.448 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.77E-8 | 158 | 185 | No hit | No description |
Pfam | PF13912 | 5.0E-12 | 162 | 187 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.078 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MSSSAMEALH ALIPEQQQQR QDWEAVSGAT SGEESGHVLQ GWAKRKRSRR HRSEEENLAL 60 CLLMLSRGGG GGGKQRVQAP QPESFAAPAV AEFKCSVCGR SFGSYQALGG HKTSHRVKLP 120 SPPADAAAAP LVSLPAVAAV LPSAEPATSS TAASSDGATN RVHRCSICQK EFPTGQALGG 180 HKRKHYDGGV GGVAASSTEL LAAAAAESEV GSTGNGSSAA RAFDLNIPAV PEFVWRPCAK 240 GKMMWEDDEE VQSPLAFKKP RLLTA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65033.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | WHTWZF1A | 0.0 | D16415.1 Triticum aestivum gene for zinc-finger protein WZF1, complete cds. | |||
GenBank | WHTWZF1B | 0.0 | D16416.1 Triticum aestivum mRNA for zinc-finger protein WZF1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167815.1 | 1e-135 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 1e-140 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | M0Y229 | 0.0 | M0Y229_HORVV; Uncharacterized protein | ||||
STRING | MLOC_65033.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-28 | salt tolerance zinc finger |