PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LSD | ||||||||
Protein Properties | Length: 132aa MW: 14153.2 Da PI: 9.2659 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 21.7 | 3.3e-07 | 22 | 44 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC l Y rGA +VRC+ C+ MLOC_64962.1 22 CNGCFSLVLYNRGAANVRCSRCN 44 **********************9 PP | |||||||
2 | zf-LSD1 | 40.2 | 5.5e-13 | 60 | 84 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L+YP+GA+ V Ca C++V MLOC_64962.1 60 CGGCRTTLMYPPGASTVGCATCHHV 84 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.1E-7 | 20 | 47 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.1E-8 | 22 | 44 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.1E-13 | 57 | 86 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.8E-12 | 60 | 84 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MPRCTSSVNH QTETATMSEL ICNGCFSLVL YNRGAANVRC SRCNMLNSTR SASQYAHLKC 60 GGCRTTLMYP PGASTVGCAT CHHVNPVRAQ GSSAPPDAHA RPQTVLVENP RTMNDKGKLV 120 SNVAVGVTSW KR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64962.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249896 | 0.0 | AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence. | |||
GenBank | AK353682 | 0.0 | AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167616.1 | 3e-92 | protein LOL4-like | ||||
Swissprot | Q84UR0 | 3e-52 | LOL4_ORYSJ; Protein LOL4 | ||||
TrEMBL | F2CPY0 | 4e-93 | F2CPY0_HORVV; Predicted protein (Fragment) | ||||
STRING | MLOC_64962.3 | 1e-93 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12333 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-26 | LSD family protein |
Publications ? help Back to Top | |||
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