PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_6489.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C3H | ||||||||
Protein Properties | Length: 73aa MW: 8184.38 Da PI: 9.6966 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.5 | 3.8e-12 | 3 | 27 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + G C+yG+rC+FaHg MLOC_6489.2 3 KKTELCNKWEG-GACSYGSRCRFAHG 27 59*******98.*************9 PP | |||||||
2 | zf-CCCH | 22.4 | 2.2e-07 | 40 | 66 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p MLOC_6489.2 40 YKTLPCQMFAAASGCPYGHRCHFRHSP 66 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.859 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-7 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.29E-8 | 3 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-14 | 4 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-12 | 34 | 66 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-8 | 36 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.831 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 40 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
GTKKTELCNK WEGGACSYGS RCRFAHGLQD MRPVIRHPRY KTLPCQMFAA ASGCPYGHRC 60 HFRHSPAPAA QSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m9o_A | 9e-19 | 4 | 67 | 11 | 75 | Tristetraproline |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_6489.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118668 | 1e-63 | AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence. | |||
GenBank | AC137267 | 1e-63 | AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 1e-63 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-63 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199363.1 | 7e-46 | putative zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q10MN8 | 4e-39 | C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A287P3T4 | 1e-48 | A0A287P3T4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_6489.1 | 4e-49 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 2e-31 | C3H family protein |