PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64879.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 342aa    MW: 36622.9 Da    PI: 6.1946
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64879.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.92.1e-2622110182
      trihelix   1 rWtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                   rWt+qe+l+Lie++r +e r r rg+       ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++  s + ++++ f
  MLOC_64879.2  22 RWTRQEILVLIEGKRVVEVRGRgRGRgaaggaaAEPTKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIREWERSLPSLAGKEVS-F 110
                   8*****************99995332345555599******************************************98766665443.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1122102No hitNo description
Gene3DG3DSA:1.10.10.608.4E-52286IPR009057Homeodomain-like
PROSITE profilePS500906.5742287IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSSAGDPGGG IAGPGRAARL PRWTRQEILV LIEGKRVVEV RGRGRGRGAA GGAAAEPTKW  60
AAVAEYCRRH GVERGPVQCR KRWSNLAGDY KKIREWERSL PSLAGKEVSF WAMRNDARRE  120
RRLPGFFDRE VYDIIEGRGS GGGGIRDGGS NAAAVLAEVG EEEGKEKVVF DSGRASVAGD  180
DGLFSSSSSS EEEDEETSTP APVPVLPTAP YPSPSQAPAV VAVAVPVSLP EKKTEAPTQG  240
SSDQAGTSKG KQQEEIRITD EPPPPQGGQK RQRSDDALGE TTDLQGKLIE ILDRSGRMVA  300
AQLESQNINC QLDREQRKDQ VSSLLGVLGK VADALYRIAD KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64879.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677350.0AK367735.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2061F21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180112.11e-167trihelix transcription factor ASR3-like isoform X1
TrEMBLF2DV170.0F2DV17_HORVV; Predicted protein
STRINGMLOC_64879.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-35Trihelix family protein