PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64879.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 291aa    MW: 31515.6 Da    PI: 8.055
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64879.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.31.6e-2622110182
      trihelix   1 rWtkqevlaLiearremeerlr.rgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                   rWt+qe+l+Lie++r +e r r rg+       ++ ++W++v++++r++g+er+p+qC+++w+nl+++ykki+e+e++  s + ++++ f
  MLOC_64879.1  22 RWTRQEILVLIEGKRVVEVRGRgRGRgaaggaaAEPTKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIREWERSLPSLAGKEVS-F 110
                   8*****************99995332345555599******************************************98766665443.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.6E-1222102No hitNo description
Gene3DG3DSA:1.10.10.606.4E-52286IPR009057Homeodomain-like
PROSITE profilePS500906.5742287IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSSAGDPGGG IAGPGRAARL PRWTRQEILV LIEGKRVVEV RGRGRGRGAA GGAAAEPTKW  60
AAVAEYCRRH GVERGPVQCR KRWSNLAGDY KKIREWERSL PSLAGKEVSF WAMRNDARRE  120
RRLPGFFDRE VYDIIEGRGS GGGGIRDGGS NAAAVLAEVG EEEGKEKVVF DSGRASVAGD  180
DGLFSSSSSS EEEDEETSTP APVPVLPTAP YPSPSQAPAV VAVAVPVSLP EKKTEAPTQG  240
SSDQGKKEEL NFTWFLFKHL NFCFHSFVLK FLTGLVLDLF PLIQNIYFPL V
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3622980.0AK362298.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180113.19e-97trihelix transcription factor ASR3-like isoform X2
TrEMBLF2DEI10.0F2DEI1_HORVV; Predicted protein
STRINGMLOC_64879.21e-114(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-35Trihelix family protein