PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64819.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 113aa    MW: 12171.2 Da    PI: 9.1598
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64819.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14.2e-171059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  ri n+  r  tf kR +g+lKKA+EL vLCda+  v++f   g+ + y+s
  MLOC_64819.5 10 RIANNVSRRATFGKRCAGLLKKAHELAVLCDADLGVLVFDAAGRQFHYCS 59
                  899*************************************9999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.067161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-21365IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-20323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MRRGSVEIRR IANNVSRRAT FGKRCAGLLK KAHELAVLCD ADLGVLVFDA AGRQFHYCSP  60
NARSVRPLLA PIFLAQESHG PCVVSIQYGC KLILDALSVT PGTLFGLCDA LSS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64819.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754730.0AK375473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154090.11e-25MADS-box transcription factor 29-like
SwissprotQ8VWM81e-20M17_MAIZE; MADS-box protein ZMM17
TrEMBLA0A287XRK93e-76A0A287XRK9_HORVV; Uncharacterized protein
TrEMBLF2EH462e-76F2EH46_HORVV; Predicted protein
STRINGMLOC_64819.22e-37(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.29e-20AGAMOUS-like 16