PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64817.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 424aa    MW: 44704.7 Da    PI: 9.864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64817.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17116161147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd+ l ++v ++G ++W++I++ ++ gR++k+c++rw + 
     MLOC_64817.1 116 KGPWSPEEDDALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 161
                      79******************************.***********985 PP
2Myb_DNA-binding51.42.6e-16170212347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
     MLOC_64817.1 170 PFTPDEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 212
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.716111166IPR017930Myb domain
SuperFamilySSF466894.87E-31113209IPR009057Homeodomain-like
SMARTSM007171.0E-15115164IPR001005SANT/Myb domain
PfamPF002492.0E-17116161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-25117169IPR009057Homeodomain-like
CDDcd001671.16E-14118160No hitNo description
SMARTSM007177.2E-14167215IPR001005SANT/Myb domain
PROSITE profilePS5129419.747168217IPR017930Myb domain
CDDcd001677.23E-11170213No hitNo description
PfamPF002497.8E-14170212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-23170216IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVATPRVPGP AVPTSPPSLP CWAGTRSPSP PVPGIYPPPA PSAPLTPSFL CLLPSSLHFS  60
TAPPPPHYFG NPPPVAGSGY YAHVHPSIDR SIYGRRVMAA CRGGGGGGGK DVDRIKGPWS  120
PEEDDALQRL VGRHGARNWS LISKSIPGRS GKSCRLRWCN QLSPQVEHRP FTPDEDDTIL  180
RAHARFGNKW ATIARLLSGR TDNAIKNHWN STLKRKYSSS SSASASASAS ASPGDDAVDD  240
DRRPLKRTSS DGYPGLCFSP GSPSGSDLSD SSHQSLPSVM PSAASHQPHV YRPVARAGGV  300
VVLPTATPQP SPPSPPPPPP PPPPATSLSL SLSLPGLDAP EPAPVAQPMP MPMPPPPVPA  360
PVQPAAAPQM PPPSMPFHLQ PPPPPQPRAA APFNGEFLSM MQEMIRIEVR NYMSGFHPRS  420
PTSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-381132164107B-MYB
1gv2_A9e-391152163104MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-391152163104C-Myb DNA-Binding Domain
1msf_C9e-391152163104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RGGGGGGGK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552410.0AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146152.11e-159transcription factor MYB44-like
TrEMBLM0Y1300.0M0Y130_HORVV; Uncharacterized protein
STRINGMLOC_64817.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-68myb domain protein 70