PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64801.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 485aa    MW: 54734.4 Da    PI: 9.2214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64801.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.6e-142873711598
                   -EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
            B3  15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                   +l++p ++a +h  +  es+t+tle ++   ++W  ++ ++  +++++l + W +Fv +n+++egD+++F  ++  ++ +++v+++r
  MLOC_64801.1 287 LLIIPEEHAIAHFPN--ESVTITLEAPDKksKKWHPRFYMTEDRSECMLIGHWLDFVCDNNVQEGDICIFIPEKGgMRSKFTVHLLR 371
                   689*********855..67777777654444*******88999999*************************9876699999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-1339141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-1041143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.86E-944140No hitNo description
SMARTSM010190.002146145IPR003340B3 DNA binding domain
PROSITE profilePS508636.56946143IPR003340B3 DNA binding domain
PfamPF023622.0E-750140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16265371IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16266371IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.814273373IPR003340B3 DNA binding domain
SMARTSM010190.0055279373IPR003340B3 DNA binding domain
PfamPF023621.1E-11287372IPR003340B3 DNA binding domain
CDDcd100171.46E-17288371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MPSKDYVLHR KKEKNYVLQG KLDLTAAQKA KIDAIDEKIR PKIPMLVVRM KKTNVKLYSD  60
LAILKDYAVN HFPSKTQTIT LKLHQKSKEW MCNFRVMPDE KGHHLYLHEF VRDNNVGEGD  120
LCIFQPMTKG DVRNFKVTVH HLSKASVDHS PVERNDICTN DGTIQEKSSY SVDIRSSSDD  180
HTEQPSGRKI YPSCQRGSSR DHRNTAKKAA KSTSFEKSGE ESPLEYNSVK SDDRQTSRGH  240
NYALSLGSCL SGAQYAKVIA LKERIQPETA VYVDVMNQRA VELPSPLLII PEEHAIAHFP  300
NESVTITLEA PDKKSKKWHP RFYMTEDRSE CMLIGHWLDF VCDNNVQEGD ICIFIPEKGG  360
MRSKFTVHLL RGETSHSGDG TGGVQVAGSD EGKTNTKRKC FLGSNVHRVS HEPLERNNSD  420
GFIQKRKKSN GLVPPYILPA MTHLSPSQEN IVEAKVQAIQ SEVPIYVSIM KKRCISAIKH  480
NMLVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287NB220.0A0A287NB22_HORVV; Uncharacterized protein
STRINGMLOC_64801.20.0(Hordeum vulgare)