PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64795.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 688aa    MW: 74246.7 Da    PI: 7.6924
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64795.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24121222199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++ +
  MLOC_64795.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTEHG 213
                   89****************************996555555..8999*********************************************..55999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+++r+
  MLOC_64795.1 214 ELCVGIRRA 222
                   *******97 PP
2Auxin_resp118.65e-39278361183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   aa+ a+++++FevvY+Prast+eFvvk++ +++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  MLOC_64795.1 278 AATLAANSQPFEVVYYPRASTPEFVVKAAAMQAAMRIHWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWPNSPWRLLQ 361
                   68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-36114224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-29118225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-21120221No hitNo description
SMARTSM010198.5E-22121223IPR003340B3 DNA binding domain
PfamPF023624.9E-22121222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929121223IPR003340B3 DNA binding domain
PfamPF065073.3E-33278361IPR010525Auxin response factor
PROSITE profilePS5174518.816593673IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MKEVGAERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANGGGAAE LAAAVGPRPL  60
PALVLCCVAG VRFLADPDTD EVFAKIRLVP VGPGEAGFRE PEGLGPLGSD PPEAREKLSS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPKL DYRADPPVQT VLAKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW STFVNQKKLV AGDSIVFLRT EHGELCVGIR RAKRVTCGGM ECISGWNAPG  240
YGGFSAFLKD EENKMMNGGP AGYVKGRGKV KIADVVEAAT LAANSQPFEV VYYPRASTPE  300
FVVKAAAMQA AMRIHWCPGM RFKMAFETED SSRISWFMGT ISSVQVADPL RWPNSPWRLL  360
QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSPPRK KLRVPQHPDF PLDGHLFNPI  420
FHGNPLGPSN SPLCCYSDNN SPAGIQGARH AQFGLPLTDH QLNKLHLGLF HGGGFNGLDA  480
LTPSSRIPKG LVLSSAPAHD SVSCLLTIGT PQSTEKSVDR KTPHIMLFGK AILTEQQMTS  540
SGSRETLSSG ATGNSSPISA ALKAGNTSDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM  600
ESEDVGRTID LSVFGSYDEL YGRLADMFGI DKEEITSHLR YRDTAGAVMH TGGLPFSDFM  660
KVARRLTITS GDKGGLAKPL IECMVQRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-801038651392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64795.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635000.0AK363500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2016A11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172888.10.0auxin response factor 22-like
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLM0Y0Z70.0M0Y0Z7_HORVV; Auxin response factor
STRINGMLOC_64795.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]